RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 EMC7Q9NPA0 242 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 TMEM5Q9Y2B1 443 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 SF3B6Q9Y3B4 125 aaKnown RBP13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 ADAM18Q9Y3Q7 739 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 TP53BP1Q12888 1972 aaPredicted RBP13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 hCG_1807616A0A1W2PRN6 198 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 HLA-DQB1P01920 261 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 RPS27P42677 84 aaKnown RBP13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 PLA1AQ53H76 456 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 ALG10BQ5I7T1 473 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 GPALPP1Q8IXQ4 340 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 OR52L1Q8NGH7 329 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 PHOSPHO1Q8TCT1 267 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 TSLPQ969D9 159 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 ZMYND19Q96E35 227 aaPredicted RBP13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 KCNJ15Q99712 375 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 TMEM27Q9HBJ8 222 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 BRD7Q9NPI1 651 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 ZSCAN32Q9NX65 697 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 CALML5Q9NZT1 146 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 FLVCR2Q9UPI3 526 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 HRH3Q9Y5N1 445 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 A0A0B4J203 849 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 TGFBR3LH3BV60 316 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 APOC3P02656 99 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 BCKDHBP21953 392 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 LCN1P31025 176 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 GABRA5P31644 462 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 SELENOPP49908 381 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 C12orf73Q69YU5 71 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 C19orf47Q8N9M1 422 aaKnown RBP13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 SPRYD4Q8WW59 207 aaPredicted RBP13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 ASB12Q8WXK4 309 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 BPIFA2Q96DR5 249 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 UBQLN3Q9H347 655 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 GHITMQ9H3K2 345 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 BCL2L10Q9HD36 194 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 IFT46Q9NQC8 304 aa13.3□□□□□ -0.28
SHROOM1-208ENST00000617339 CYR61O00622 381 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 GPR171O14626 319 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 KCNJ13O60928 360 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 YPEL5P62699 121 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 SMAD2Q15796 467 aaKnown RBP13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 CXXC5Q7LFL8 322 aaKnown RBP13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 ADGRG3Q86Y34 549 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 ZNF687Q8N1G0 1237 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 TOMM5Q8N4H5 51 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 OR2T33Q8NG76 320 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 HSD17B8Q92506 261 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 SIDT1Q9NXL6 827 aaKnown RBP13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 FLRT3Q9NZU0 649 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 TNFRSF10DQ9UBN6 386 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 SESN1Q9Y6P5 492 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 KIAA1549LQ6ZVL6 1849 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 OMPP47874 163 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 TSPAN31Q12999 210 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 SFRP5Q5T4F7 317 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 SLC36A4Q6YBV0 504 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 STPG2Q8N412 459 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 GPBAR1Q8TDU6 330 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 ELMOD3Q96FG2 381 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 ABHD1Q96SE0 405 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 ADOQ96SZ5 270 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 POT1Q9NUX5 634 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 RASD1Q9Y272 281 aa13.29□□□□□ -0.28
SHROOM1-208ENST00000617339 OPN1LWP04000 364 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 SHC1P29353 583 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 CAMK2DQ13557 499 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 ELOAQ14241 798 aaKnown RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 SIAH3Q8IW03 269 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 ZNF619Q8N2I2 560 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 OR52H1Q8NGJ2 320 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 SFXN2Q96NB2 322 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 C19orf53Q9UNZ5 99 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 KIR2DS5A0A0G2JLQ3 304 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 A0A0G2JNG1 304 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 KIR2DS3K7RE56 304 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 PDGFBP01127 241 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 IGKV1D-16P01601 117 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 HPXP02790 462 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 LIMS3P0CW19 117 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 LIMS4P0CW20 117 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 BTG1P62324 171 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 RIN1Q13671 783 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 KIR2DS5Q14953 304 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 PRPF38BQ5VTL8 546 aaKnown RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 PRSS45Q7RTY3 260 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 NR2C2APQ86WQ0 139 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 OR2L13Q8N349 312 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 CDRT4Q8N9R6 151 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 UXS1Q8NBZ7 420 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 OR52E2Q8NGJ4 325 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 OR51Q1Q8NH59 317 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 MOSPD2Q8NHP6 518 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 SFXN5Q8TD22 340 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 ANKRD9Q96BM1 317 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 ERMAPQ96PL5 475 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 SOSTQ9BQB4 213 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 DLL4Q9NR61 685 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 FBXL2Q9UKC9 423 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms