RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MFSD9Q8NBP5 474 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 OR6M1Q8NGM8 313 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 SMIM4Q8WVI0 70 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 TMEM106AQ96A25 262 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 PELI1Q96FA3 418 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 DGAT2Q96PD7 388 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 GHITMQ9H3K2 345 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 MAFFQ9ULX9 164 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 EEF1E1-BLOC1S5C9J1V9 151 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 IGHA1P01876 353 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 ANKRD34CP0C6C1 535 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 APEHP13798 732 aaKnown RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 MMP15P51511 669 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 GPR143P51810 404 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 C1orf61Q13536 156 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 TMEM31Q5JXX7 168 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 ZNF776Q68DI1 518 aaPredicted RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 CD200R1LQ6Q8B3 271 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 SSX6Q7RTT6 188 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 BPHLQ86WA6 291 aaPredicted RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 LSMEM1Q8N8F7 131 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 ALG12Q9BV10 488 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 MS4A7Q9GZW8 240 aaPredicted RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 PNO1Q9NRX1 252 aaKnown RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 HPF1Q9NWY4 346 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 PRICKLE3O43900 615 aaPredicted RBP11.6□□□□□ -0.55
LIG1-221ENST00000613670 CYB5AP00167 134 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 ARHGAP40Q5TG30 622 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 NDUFAF7Q7L592 441 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 NR2C2APQ86WQ0 139 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 TMEM185AQ8NFB2 350 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 OR5M1Q8NGP8 315 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 METTL21AQ8WXB1 218 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 SMIM19Q96E16 107 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 OR2S2Q9NQN1 319 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 MRPS18AQ9NVS2 196 aaKnown RBP11.6□□□□□ -0.55
LIG1-221ENST00000613670 ELF5Q9UKW6 265 aaPredicted RBP11.6□□□□□ -0.55
LIG1-221ENST00000613670 PLCL2Q9UPR0 1127 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 PLPP2O43688 288 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 TBX19O60806 448 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 LILRB5O75023 590 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 EPPINO95925 133 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 NAT1P18440 290 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 PRAMEF8Q5VWM4 474 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 PRAMEF7Q5VXH5 474 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 SLC35D2Q76EJ3 337 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 ZNF546Q86UE3 836 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 THAP6Q8TBB0 222 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 APOOQ9BUR5 198 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 OR8D2Q9GZM6 311 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 ELL3Q9HB65 397 aaPredicted RBP11.6□□□□□ -0.55
LIG1-221ENST00000613670 IL21RQ9HBE5 538 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 POMT2Q9UKY4 750 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 IFITM5A6NNB3 132 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 GABARAPH6UMI1 98 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 FGF17O60258 216 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 RAB3DO95716 219 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 GPR75O95800 540 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 FXYD6P3P58550 94 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 CAMK2DQ13557 499 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 CBFBQ13951 182 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 GFOD2Q3B7J2 385 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 LRFN4Q6PJG9 635 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 DPY19L4Q7Z388 723 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 LIX1LQ8IVB5 337 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 GLB1L2Q8IW92 636 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 MICU1Q9BPX6 476 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 ZFYVE21Q9BQ24 234 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 TMEM106CQ9BVX2 250 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 FBXL21Q9UKT6 434 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 SIGLEC7Q9Y286 467 aa11.6□□□□□ -0.55
LIG1-221ENST00000613670 H0YGG7 62 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 PBX2P40425 430 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 AKR1C2P52895 323 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ARF3P61204 181 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 AKR1C1Q04828 323 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 KCNAB1Q14722 419 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 MLC1Q15049 377 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 MLF2Q15773 248 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 FAM74A1Q5RGS3 127 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 GPR139Q6DWJ6 353 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ULK3Q6PHR2 472 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 HAGHLQ6PII5 290 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 PRSS42Q7Z5A4 293 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 IQCF2Q8IXL9 164 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 RFLNBQ8N5W9 214 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 OR51S1Q8NGJ8 323 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 POTEKPQ9BYX7 375 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 FGF22Q9HCT0 170 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ZFP64Q9NPA5 681 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 VWA8A3KMH1 1905 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 TCRBV16S1A1N1A0A5B0 115 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 PPM1BO75688 479 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 UGT2B7P16662 529 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 CXCR1P25024 350 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 SEC61A1P61619 476 aaKnown RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 ARHGAP11BQ3KRB8 267 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 CDONQ4KMG0 1287 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 TMEM52BQ4KMG9 183 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ALG10Q5BKT4 473 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 272.3 ms