RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NRARPQ7Z6K4 114 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 CCDC190Q86UF4 302 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 AQP12AQ8IXF9 295 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 LMNTD1Q8N9Z9 388 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 PAPD5Q8NDF8 572 aaKnown RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 FAM71CQ8NEG0 241 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 STEAP2Q8NFT2 490 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 OR56B1Q8NGI3 324 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 HM13Q8TCT9 377 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 AGR3Q8TD06 166 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 FAM172AQ8WUF8 416 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 KCTD4Q8WVF5 259 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 CKAP2Q8WWK9 683 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 GTF3AQ92664 365 aaKnown RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 TFGQ92734 400 aaPredicted RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 TSLPQ969D9 159 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 UCN3Q969E3 161 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SLCO4A1Q96BD0 722 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 LINGO1Q96FE5 620 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 TPD52L3Q96J77 140 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 DUX5Q96PT3 197 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 KRT12Q99456 494 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SPAG8Q99932 426 aaPredicted RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SLC39A3Q9BRY0 314 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 ATG101Q9BSB4 218 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF416Q9BWM5 594 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 UBQLN3Q9H347 655 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 UGT1A7Q9HAW7 530 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 UGT1A10Q9HAW8 530 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 RPL26L1Q9UNX3 145 aaKnown RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 FOXA2Q9Y261 457 aaPredicted RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 NCKAP5O14513 1909 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 TRBV11-1A0A0K0K1C0 115 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ZSCAN5BA6NJL1 495 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ANKRD66B4E2M5 251 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 M0QX08 132 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 EEF2KO00418 725 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ERLIN1O75477 346 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 CDC123O75794 336 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 TNFSF13O75888 250 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 RCBTB2O95199 551 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 CYP1A2P05177 515 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 RHOXF2BP0C7M4 288 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 SAGP10523 405 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 EZRP15311 586 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF23P17027 643 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 GALP22466 123 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 CA4P22748 312 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 PDHA2P29803 388 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 HOXD3P31249 432 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 IL2RGP31785 369 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 HSD17B3P37058 310 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 TAGLN2P37802 199 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 MAGEB1P43366 347 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 XCR1P46094 333 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 FMO5P49326 533 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 CNN1P51911 297 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 DLK1P80370 383 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 MELKQ14680 651 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 MRGPRG-AS1Q2M3A8 158 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 HKDC1Q2TB90 917 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF672Q499Z4 452 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 LBHQ53QV2 105 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 FAM76BQ5HYJ3 339 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 DMRTC1Q5HYR2 192 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 LDLRAP1Q5SW96 308 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 MARC1Q5VT66 337 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 WBP2NLQ6ICG8 309 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ASPHD2Q6ICH7 369 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 METTL2BQ6P1Q9 378 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 LEG1Q6P5S2 330 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 LRRC8BQ6P9F7 803 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 METAP1DQ6UB28 335 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 B3GLCTQ6Y288 498 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 Q6ZTK2 550 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 LRRC70Q7Z2Q7 622 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 NT5DC3Q86UY8 548 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 RCOR2Q8IZ40 523 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 BPIFB2Q8N4F0 458 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 PARP16Q8N5Y8 322 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 RNF148Q8N7C7 305 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 CNEP1R1Q8N9A8 125 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 KBTBD8Q8NFY9 601 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 OR52B4Q8NGK2 314 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 OR52K1Q8NGK4 314 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 OR1J2Q8NGS2 313 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 SELENOMQ8WWX9 145 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ESAMQ96AP7 390 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 MOB3AQ96BX8 217 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 URB1-AS1Q96HZ7 61 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 METTL2AQ96IZ6 378 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 SFXN2Q96NB2 322 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ZFP3Q96NJ6 502 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 TBX15Q96SF7 602 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 RHOXF2Q9BQY4 288 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 DRC3Q9H069 523 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 OR52A5Q9H2C5 316 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 RAD21L1Q9H4I0 556 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 COG4Q9H9E3 785 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms