RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 EPS8Q12929 822 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 BNIP2Q12982 314 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 OR7A5Q15622 319 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 GSTA3Q16772 222 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 TUSC1Q2TAM9 212 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 SMU1Q2TAY7 513 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 PGS1Q32NB8 556 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 VHLLQ6RSH7 139 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 LRRC74BQ6ZQY2 392 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 C16orf62Q7Z3J2 963 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 CMIPQ8IY22 773 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 IFT20Q8IY31 132 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 CDK20Q8IZL9 346 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 SVOPLQ8N434 492 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 CCDC63Q8NA47 563 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 MNS1Q8NEH6 495 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 AGR3Q8TD06 166 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 DDIT4LQ96D03 193 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 TRNT1Q96Q11 434 aaKnown RBP5.27□□□□□ -1.57
VRK3-220ENST00000600259 SNX18Q96RF0 628 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 RSPO3Q9BXY4 272 aaPredicted RBP5.27□□□□□ -1.57
VRK3-220ENST00000600259 MTHFD2LQ9H903 347 aaPredicted RBP5.27□□□□□ -1.57
VRK3-220ENST00000600259 RLIMQ9NVW2 624 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 B3GNT2Q9NY97 397 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 SLC17A7Q9P2U7 560 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 FBXO9Q9UK97 447 aaPredicted RBP5.27□□□□□ -1.57
VRK3-220ENST00000600259 PRDM4Q9UKN5 801 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 SPEF1Q9Y4P9 236 aa5.27□□□□□ -1.57
VRK3-220ENST00000600259 SH3PXD2BA1X283 911 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 CDHR4A6H8M9 788 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 CFAP73A6NFT4 308 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 B4DSR2 109 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ITM2AO43736 263 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 SKAP2O75563 359 aaPredicted RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 VAMP5O95183 116 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 CPSF4O95639 269 aaKnown RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 HPXP02790 462 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 GPIP06744 558 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ADRA2AP08913 450 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 TFPTP0C1Z6 253 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ZNF35P13682 527 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 PRG2P13727 222 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 IFNGR1P15260 489 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 CREB1P16220 341 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 NR4A1P22736 598 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ETV4P43268 484 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 EVX1P49640 407 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 MVDP53602 400 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 EGR4Q05215 589 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ADRM1Q16186 407 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 COX20Q5RI15 118 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 MRPL2Q5T653 305 aaKnown RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 ATAD3BQ5T9A4 648 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 TMEM225Q6GV28 225 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 KLHL24Q6TFL4 600 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 UGT2A3Q6UWM9 527 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 USP43Q70EL4 1123 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 SPATA21Q7Z572 469 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ABHD12BQ7Z5M8 362 aaPredicted RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 ANKRD46Q86W74 232 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 WDFY1Q8IWB7 410 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 GSPT2Q8IYD1 628 aaKnown RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 KDM8Q8N371 416 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 CLIP4Q8N3C7 705 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ANKK1Q8NFD2 765 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 OR4A15Q8NGL6 344 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 CLDND2Q8NHS1 167 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 SGMS2Q8NHU3 365 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 EPS8L3Q8TE67 593 aaKnown RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 FAM216AQ8WUB2 273 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 WDR60Q8WVS4 1066 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 YIPF5Q969M3 257 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 TESCQ96BS2 214 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 TUBGCP3Q96CW5 907 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 TEX37Q96LM6 180 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 C16orf45Q96MC5 204 aaPredicted RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 CCDC115Q96NT0 180 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 ZIM3Q96PE6 472 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 PTDSS2Q9BVG9 487 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 C20orf27Q9GZN8 174 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 METTL17Q9H7H0 456 aaPredicted RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 AKTIPQ9H8T0 292 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 GPR35Q9HC97 309 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 B3GAT1Q9P2W7 334 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 MARCOQ9UEW3 520 aaPredicted RBP5.26□□□□□ -1.57
VRK3-220ENST00000600259 MID2Q9UJV3 735 aa5.26□□□□□ -1.57
VRK3-220ENST00000600259 VWFP04275 2813 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 LOC102725191A0A1B0GVB3 256 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 OR6C65A6NJZ3 312 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 SMIM23A6NLE4 172 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 A8MVM7 634 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 ZNF587BE7ETH6 402 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 FRS3O43559 492 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 RP2O75695 350 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 SNUPNO95149 360 aaKnown RBP5.25□□□□□ -1.57
VRK3-220ENST00000600259 BPGMP07738 259 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 GKN3PP0CG01 181 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 CXCR1P25024 350 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 IL12AP29459 219 aa5.25□□□□□ -1.57
VRK3-220ENST00000600259 SERPINB5P36952 375 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms