RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TAPBPLQ9BX59 468 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 SELENONQ9NZV5 590 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 NDUFAF4Q9P032 175 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 B3GAT1Q9P2W7 334 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 MAGEL2Q9UJ55 1249 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 FLVCR1Q9Y5Y0 555 aa12.6□□□□□ -0.39
SHKBP1-217ENST00000598558 TCRBV5S2A0A599 114 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 KPNA4O00629 521 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 PIP5K1CO60331 668 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 CD79BP40259 229 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 OR3A2P47893 321 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 FOXG1P55316 489 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 TSC22D1Q15714 1073 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 SPATS1Q496A3 300 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC46A3Q7Z3Q1 461 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 EPHX4Q8IUS5 362 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 OR9K2Q8NGE7 335 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 OR6S1Q8NH40 331 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 GEMIN6Q8WXD5 167 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 PYURFQ96I23 114 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 MPP4Q96JB8 637 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 PRRC1Q96M27 445 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 NSMCE2Q96MF7 247 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 C20orf141Q9NUB4 165 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 RPS6KA6Q9UK32 745 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 ENPP4Q9Y6X5 453 aa12.59□□□□□ -0.39
SHKBP1-217ENST00000598558 hCG_2039718K7EN88 272 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 ACOT8O14734 319 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 OR2T1O43869 369 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 CH25HO95992 272 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 IGHV3-9P01782 118 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 IFNW1P05000 195 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 HLA-DOBP13765 273 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 COX6B1P14854 86 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 TRIM25Q14258 630 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 ZNF74Q16587 644 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 ANKRD34AQ69YU3 496 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 TTC33Q6PID6 262 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 TBPL2Q6SJ96 375 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 STAC2Q6ZMT1 411 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 CREB3L2Q70SY1 520 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 H1FNTQ75WM6 255 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 GALNT5Q7Z7M9 940 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 MEX3DQ86XN8 651 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 ADGRG4Q8IZF6 3080 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 GABRG1Q8N1C3 465 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 MARVELD3Q96A59 401 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 POLR2J2Q9GZM3 115 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 POLR2J3Q9H1A7 115 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 CRIM1Q9NZV1 1036 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 ACTR3BQ9P1U1 418 aa12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 PRPF19Q9UMS4 504 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 NOSIPQ9Y314 301 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-217ENST00000598558 PLPP3O14495 311 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 THRBP10828 461 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 POU2F1P14859 743 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 FUT1P19526 365 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 CBX1P83916 185 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 LGALS3BPQ08380 585 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 TMEM225Q6GV28 225 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 C5orf46Q6UWT4 87 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 GPAT4Q86UL3 456 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 OFCC1Q8IZS5 231 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 ARHGAP24Q8N264 748 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 C10orf53Q8N6V4 93 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 PIK3C3Q8NEB9 887 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 TMEM239Q8WW34 195 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 WFIKKN1Q96NZ8 548 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 EPYCQ99645 322 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 BTBD10Q9BSF8 475 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 SF3B5Q9BWJ5 86 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 CADM1Q9BY67 442 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 NMNAT1Q9HAN9 279 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 FOXD3Q9UJU5 478 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 SAMD4AQ9UPU9 718 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 SETXQ7Z333 2677 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 HCFC1P51610 2035 aa12.57□□□□□ -0.4
SHKBP1-217ENST00000598558 INTS1Q8N201 2190 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 CACNA1CQ13936 2221 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 A0A087WUU8 490 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 ENO4A6NNW6 628 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 GPR171O14626 319 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 GYG2O15488 501 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 GSC2O15499 205 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 HNRNPRO43390 633 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 GMNNO75496 209 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 ADAP00813 363 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 MT-ND1P03886 318 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 UGT2B10P36537 528 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 ST3GAL3Q11203 375 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 POU4F3Q15319 338 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 TSPO2Q5TGU0 170 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 LCN8Q6JVE9 175 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 CXorf67Q86X51 503 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 TMEM45BQ96B21 275 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 CCDC124Q96CT7 223 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 TXNDC15Q96J42 360 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 OXGR1Q96P68 337 aa12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 TACO1Q9BSH4 297 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-217ENST00000598558 FUZQ9BT04 418 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms