RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 RBM45Q8IUH3 476 aaKnown RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ADAMTS16Q8TE57 1224 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 KISS1RQ969F8 398 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 TAAR8Q969N4 342 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 S100PBPQ96BU1 408 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF385AQ96PM9 386 aaKnown RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 AMBRA1Q9C0C7 1298 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 ADPRHL2Q9NX46 363 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 GMPR2Q9P2T1 348 aaKnown RBP14.25□□□□□ -0.13
TRIM28-213ENST00000598355 B3GAT1Q9P2W7 334 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 BAG5Q9UL15 447 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 RASD1Q9Y272 281 aa14.25□□□□□ -0.13
TRIM28-213ENST00000598355 F8P00451 2351 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 LOC102725191A0A1B0GVB3 256 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 CASKO14936 926 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 MRPL33O75394 65 aaKnown RBP14.24□□□□□ -0.13
TRIM28-213ENST00000598355 BGLAPP02818 100 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 NUDT2P50583 147 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 TSC22D1Q15714 1073 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 PAMR1Q6UXH9 720 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 CASP12Q6UXS9 341 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF100Q8IYN0 542 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF433Q8N7K0 673 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-213ENST00000598355 ANKS4BQ8N8V4 417 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 SLC26A7Q8TE54 656 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 HS3ST6Q96QI5 342 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 POLR2J2Q9GZM3 115 aaKnown RBP14.24□□□□□ -0.13
TRIM28-213ENST00000598355 POLR2J3Q9H1A7 115 aaKnown RBP14.24□□□□□ -0.13
TRIM28-213ENST00000598355 LIME1Q9H400 295 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 C6orf203Q9P0P8 240 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-213ENST00000598355 SEC14L4Q9UDX3 406 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 ST6GALNAC2Q9UJ37 374 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 B3GALT5Q9Y2C3 310 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 ARL2BPQ9Y2Y0 163 aa14.24□□□□□ -0.13
TRIM28-213ENST00000598355 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-213ENST00000598355 TRAPPC13A5PLN9 417 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 CPSF4LA6NMK7 179 aaKnown RBP14.23□□□□□ -0.13
TRIM28-213ENST00000598355 M0R082 166 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 NDUFAB1O14561 156 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 LYZL6O75951 148 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 IFNA14P01570 189 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 ITGA5P08648 1049 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 IL32P24001 234 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 GSK3BP49841 420 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 LIPEQ05469 1076 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 LTBQ06643 244 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 MFSD13AQ14CX5 517 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 TAB1Q15750 504 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 CYBRD1Q53TN4 286 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 BEX5Q5H9J7 111 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 CREB3L2Q70SY1 520 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 BHLHA15Q7RTS1 189 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-213ENST00000598355 CARM1Q86X55 608 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 EPHX4Q8IUS5 362 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 SCAIQ8N9R8 606 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 VANGL1Q8TAA9 524 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF417Q8TAU3 575 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 PROX1Q92786 737 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 ZC3HAV1LQ96H79 300 aaKnown RBP14.23□□□□□ -0.13
TRIM28-213ENST00000598355 BOD1Q96IK1 185 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 MPP4Q96JB8 637 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF587Q96SQ5 575 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-213ENST00000598355 EPYCQ99645 322 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 PRSS27Q9BQR3 290 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 TMEM204Q9BSN7 226 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 ALG2Q9H553 416 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 SLC7A10Q9NS82 523 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 PARPBPQ9NWS1 579 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 TAS2R16Q9NYV7 291 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 SELENONQ9NZV5 590 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 RCE1Q9Y256 329 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 CORINQ9Y5Q5 1042 aa14.23□□□□□ -0.13
TRIM28-213ENST00000598355 IGHV3-9P01782 118 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 TNFRSF1BP20333 461 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 GRPRP30550 384 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 FXNQ16595 210 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 LRRC23Q53EV4 343 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-213ENST00000598355 TIMM23BQ5SRD1 257 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 TSPO2Q5TGU0 170 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 TMEM225Q6GV28 225 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 NHLRC1Q6VVB1 395 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 SSX8Q7RTT4 187 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 P3H2Q8IVL5 708 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 C1orf162Q8NEQ5 155 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-213ENST00000598355 MOGAT1Q96PD6 335 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 SLC19A3Q9BZV2 496 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 ASB6Q9NWX5 421 aa14.22□□□□□ -0.13
TRIM28-213ENST00000598355 OR5H1A6NKK0 313 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 TRAF3IP2O43734 574 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SHOX2O60902 331 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-213ENST00000598355 ZNF432O94892 652 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 MT-ATP6P00846 226 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 IGF2P01344 180 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 GTF2E2P29084 291 aaKnown RBP14.21□□□□□ -0.13
TRIM28-213ENST00000598355 NR1H2P55055 460 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 FOXG1P55316 489 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-213ENST00000598355 PSME3P61289 254 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 SELENOWP63302 87 aa14.21□□□□□ -0.13
TRIM28-213ENST00000598355 H1FNTQ75WM6 255 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms