RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TMEM236Q5W0B7 351 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 C12orf73Q69YU5 71 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 LNX2Q8N448 690 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 MEIOBQ8N635 442 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 ADPRHL1Q8NDY3 354 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 OR8J1Q8NGP2 316 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 C9orf43Q8TAL5 461 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 SMPDL3BQ92485 455 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 ABTB1Q969K4 478 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 ARL5BQ96KC2 179 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 MCCC2Q9HCC0 563 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 CHST11Q9NPF2 352 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 PNPLA3Q9NST1 481 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 PAQR5Q9NXK6 330 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 CSAG2Q9Y5P2 127 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 CEP295Q9C0D2 2601 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 LRRN3E7EW58 273 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 PLPP3O14495 311 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 RNF13O43567 381 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 CLIC3O95833 236 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 OPN1LWP04000 364 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 CD14P08571 375 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 ADORA3P0DMS8 318 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 IMPDH2P12268 514 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 AHCYP23526 432 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 PCYT1AP49585 367 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 DIO1P49895 249 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 RAC3P60763 192 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 RPS3AP61247 264 aaKnown RBP13.71□□□□□ -0.21
TRIM28-209ENST00000597423 ISL1P61371 349 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 TEKQ02763 1124 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 EMC4Q5J8M3 183 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 GPR139Q6DWJ6 353 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 TMEM225Q6GV28 225 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 ACSM5Q6NUN0 579 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 ARHGAP11AQ6P4F7 1023 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 Q6ZPB1 254 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-209ENST00000597423 CHMP1BQ7LBR1 199 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 RBMXL3Q8N7X1 1067 aaKnown RBP13.71□□□□□ -0.21
TRIM28-209ENST00000597423 RHOXF1Q8NHV9 184 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 GPX7Q96SL4 187 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-209ENST00000597423 POLDIP3Q9BY77 421 aaKnown RBP13.71□□□□□ -0.21
TRIM28-209ENST00000597423 PLA2G12AQ9BZM1 189 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 DEFB127Q9H1M4 99 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 ZDHHC11Q9H8X9 412 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 INIPQ9NRY2 104 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 CLN6Q9NWW5 311 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 ACACAQ13085 2346 aa13.71□□□□□ -0.21
TRIM28-209ENST00000597423 A0A1W2PNR3 127 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 A0A1W2PRG6 482 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 RIIAD1A6NNX1 92 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 M0R082 166 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 EIF1AYO14602 144 aaKnown RBP13.7□□□□□ -0.22
TRIM28-209ENST00000597423 ARPC3O15145 178 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 FZD7O75084 574 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 VAMP5O95183 116 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 TSPAN19P0C672 248 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 UQCRC1P31930 480 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 CD97P48960 835 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 CHN2P52757 468 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 CTXN1P60606 82 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 SNRPGP62308 76 aaKnown RBP13.7□□□□□ -0.22
TRIM28-209ENST00000597423 RPL18Q07020 188 aaKnown RBP13.7□□□□□ -0.22
TRIM28-209ENST00000597423 PUDPQ08623 228 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 CDK5R2Q13319 367 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 MEDAGQ5VYS4 303 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 HBMQ6B0K9 141 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 PAQR6Q6TCH4 344 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 IQCF1Q8N6M8 205 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 ANKK1Q8NFD2 765 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 OR8D4Q8NGM9 314 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 OR2V1Q8NHB1 315 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 NEIL3Q8TAT5 605 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF417Q8TAU3 575 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 ERMAPQ96PL5 475 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF587Q96SQ5 575 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-209ENST00000597423 MFRPQ9BY79 579 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 SCN3BQ9NY72 215 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 TAS2R5Q9NYW4 299 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 H2AFY2Q9P0M6 372 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-209ENST00000597423 GRHPRQ9UBQ7 328 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 IL20RAQ9UHF4 553 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 KLHL21Q9UJP4 597 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 BLOC1S6Q9UL45 172 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 RASD1Q9Y272 281 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 TP53TG5Q9Y2B4 290 aa13.7□□□□□ -0.22
TRIM28-209ENST00000597423 SH3D21A4FU49 640 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 BHLHE40O14503 412 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 TLX2O43763 284 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 PPP1R3DO95685 299 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 PAICSP22234 425 aaKnown RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 ENPP1P22413 925 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 AGFG1P52594 562 aaKnown RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 CXCR4P61073 352 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 FOXK2Q01167 660 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 CD47Q08722 323 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 FHL1Q13642 323 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 MAD2L1BPQ15013 274 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF239Q16600 458 aaKnown RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 PLEKHN1Q494U1 663 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms