RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ALPLP05186 524 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF17P17021 662 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 SHC1P29353 583 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 ARHGDIAP52565 204 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 CTBP2P56545 445 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 DAG1Q14118 895 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.47□□□□□ -1.052e-7■□□□□ 10.6
TRIM28-208ENST00000597172 KDM4DQ6B0I6 523 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 TMPRSS11FQ6ZWK6 438 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 SIAH3Q8IW03 269 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 GALNT4Q8N4A0 578 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 FAM109AQ8N4B1 249 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 LINC00471Q8N535 108 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 AQP11Q8NBQ7 271 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 ATP6V1C2Q8NEY4 427 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 OR14L1PQ8NHC6 308 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 STK35Q8TDR2 534 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 TAAR8Q969N4 342 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 DNAJA3Q96EY1 480 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 FAM46AQ96IP4 442 aaKnown RBP8.47□□□□□ -1.05
TRIM28-208ENST00000597172 ARL5BQ96KC2 179 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 PIGQQ9BRB3 760 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 PTDSS2Q9BVG9 487 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 DGCR6LQ9BY27 220 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 SLC19A3Q9BZV2 496 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 KLHL4Q9C0H6 718 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 DEFB127Q9H1M4 99 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 USE1Q9NZ43 259 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 B4GALT7Q9UBV7 327 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 CHRNA9Q9UGM1 479 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 MGAT4BQ9UQ53 548 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 SLC6A5Q9Y345 797 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 MED31Q9Y3C7 131 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 ARID1AO14497 2285 aa8.47□□□□□ -1.05
TRIM28-208ENST00000597172 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.47□□□□□ -1.053e-13■■■■□ 22.1
TRIM28-208ENST00000597172 CUBNO60494 3623 aa8.46□□□□□ -1.05
TRIM28-208ENST00000597172 TRAV36DV7A0A075B6V5 113 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CDC42EP2O14613 210 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 PTP4A3O75365 173 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CH25HO95992 272 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 IGF2P01344 180 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 BGLAPP02818 100 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 TP53P04637 393 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 IGFBP1P08833 259 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 IMPDH2P12268 514 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 PEPDP12955 493 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 IFI30P13284 250 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 ANXA8P13928 327 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 POU2F1P14859 743 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 FUT1P19526 365 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CHMP24386 653 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 ELK4P28324 431 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 GPR4P46093 362 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 GSSP48637 474 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 STARP49675 285 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 ALDH3A2P51648 485 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 TDGF1P3P51864 188 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 MAP2K6P52564 334 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 SUCLG1P53597 346 aaKnown RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CLDN15P56746 228 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 RAC1P63000 192 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CRYZQ08257 329 aaKnown RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 FHL1Q13642 323 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 TMEM176BQ3YBM2 270 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CMPK2Q5EBM0 449 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 C1orf140Q5VVS0 124 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 RAET1LQ5VY80 246 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 ZNF324BQ6AW86 544 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 KLHL17Q6TDP4 642 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 CD300LDQ6UXZ3 194 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 TRILQ7L0X0 811 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 RRM2BQ7LG56 351 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 SLC46A3Q7Z3Q1 461 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 LRRC17Q8N6Y2 441 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 FAM98AQ8NCA5 519 aaKnown RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 WFDC11Q8NEX6 87 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 PIGXQ8TBF5 258 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 MAGEE2Q8TD90 523 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 GNPDA2Q8TDQ7 276 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 GTPBP3Q969Y2 492 aaKnown RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 BPIFA2Q96DR5 249 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 MOGAT1Q96PD6 335 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 RBM4BQ9BQ04 359 aaKnown RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 RBM4Q9BWF3 364 aaKnown RBP8.46□□□□□ -1.06
TRIM28-208ENST00000597172 POTEKPQ9BYX7 375 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 SLC6A15Q9H2J7 730 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 TMEM185BQ9H7F4 350 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 SERINC1Q9NRX5 453 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 REV1Q9UBZ9 1251 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 ST6GALNAC2Q9UJ37 374 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 LIPGQ9Y5X9 500 aa8.46□□□□□ -1.06
TRIM28-208ENST00000597172 MGAM2Q2M2H8 2515 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 A0A0J9YW62 118 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 A0A1W2PNR3 127 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 FTCDNL1E5RQL4 147 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 E9PQ18 207 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 H0YC42 278 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 H3BML4 177 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ACOT7O00154 380 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 FZD7O75084 574 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms