RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZNF782Q6ZMW2 699 aaPredicted RBP14.04□□□□□ -0.16
UPF1-204ENST00000596842 OR8S1Q8NH09 359 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ASB16Q96NS5 453 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 EMC7Q9NPA0 242 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 DLL4Q9NR61 685 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 COPS3Q9UNS2 423 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 PCDHGA9Q9Y5G4 932 aaKnown RBP14.04□□□□□ -0.16
UPF1-204ENST00000596842 TDRD6O60522 2096 aaKnown RBP14.04□□□□□ -0.16
UPF1-204ENST00000596842 RDH16O75452 317 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 NGFRP08138 427 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 OR8G3PP0DMU2 310 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 DCTDP32321 178 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 RUNX3Q13761 415 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 TCTE1Q5JU00 501 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 TMEM69Q5SWH9 247 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 YOD1Q5VVQ6 348 aaPredicted RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 CD276Q5ZPR3 534 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 FIGLAQ6QHK4 219 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 PRSS42Q7Z5A4 293 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 TPRA1Q86W33 373 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 LIX1LQ8IVB5 337 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 AHCYL2Q96HN2 611 aaKnown RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 LIN7BQ9HAP6 207 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 TAS2R10Q9NYW0 307 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 FLRT3Q9NZU0 649 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 FXYD6-FXYD2A0A087WZ82 144 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 ATG12O94817 140 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 AGR2O95994 175 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 GDI1P31150 447 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 PPP2CBP62714 309 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 PPP2CAP67775 309 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 GAB4Q2WGN9 574 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 PRAMEF8Q5VWM4 474 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 PRAMEF7Q5VXH5 474 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 FGD2Q7Z6J4 655 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 OR2M4Q96R27 311 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 FXYD6Q9H0Q3 95 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 MPDZO75970 2070 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 ARPC5O15511 151 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 PSMA6P60900 246 aaKnown RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 RPS21P63220 83 aaKnown RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 CAMK2DQ13557 499 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 NLRC3Q7RTR2 1065 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 SYNPRQ8TBG9 265 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 OR1E3Q8WZA6 343 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 RBPMSQ93062 196 aaKnown RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 ULBP3Q9BZM4 244 aa14.03□□□□□ -0.16
UPF1-204ENST00000596842 MYEF2Q9P2K5 600 aaKnown RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 ZNF223Q9UK11 482 aaPredicted RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 ING1Q9UK53 422 aaPredicted RBP14.03□□□□□ -0.16
UPF1-204ENST00000596842 PRSS38A1L453 326 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 H0YGG7 62 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 L7N2F9 121 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 LINC00271P0C7V0 271 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 ARF3P61204 181 aaPredicted RBP14.02□□□□□ -0.16
UPF1-204ENST00000596842 RPS15AP62244 130 aaKnown RBP14.02□□□□□ -0.16
UPF1-204ENST00000596842 HEPHL1Q6MZM0 1159 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 TMPRSS9Q7Z410 1059 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 TMPRSS12Q86WS5 348 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 OR2L13Q8N349 312 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 ZNF436Q9C0F3 470 aaPredicted RBP14.02□□□□□ -0.16
UPF1-204ENST00000596842 ACTR6Q9GZN1 396 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 SLC6A15Q9H2J7 730 aa14.02□□□□□ -0.16
UPF1-204ENST00000596842 THAP10Q9P2Z0 257 aaPredicted RBP14.02□□□□□ -0.16
UPF1-204ENST00000596842 ELF5Q9UKW6 265 aaPredicted RBP14.02□□□□□ -0.16
UPF1-204ENST00000596842 J3QRE1 110 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 HRKO00198 91 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 GNRH1P01148 92 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 TPOP07202 933 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 SRMP19623 302 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 KIAA1024LP59773 190 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 TMEM88Q6PEY1 159 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 NHLRC1Q6VVB1 395 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 OR56B4Q8NH76 319 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 ZNF350Q9GZX5 532 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 TCF7L1Q9HCS4 588 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 KIAA1549LQ6ZVL6 1849 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 TXNL1O43396 289 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 DOK2O60496 412 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 SERPINA3P01011 423 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 F13BP05160 661 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 PPP1CAP62136 330 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 RIN1Q13671 783 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 FAM53BQ14153 422 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 CDK5R1Q15078 307 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 DMKNQ6E0U4 476 aaPredicted RBP14.02□□□□□ -0.17
UPF1-204ENST00000596842 KIAA1324Q6UXG2 1013 aaKnown RBP14.02□□□□□ -0.17
UPF1-204ENST00000596842 DGAT2L6Q6ZPD8 337 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 CDRT4Q8N9R6 151 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 BADQ92934 168 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 UBL7Q96S82 380 aaPredicted RBP14.02□□□□□ -0.17
UPF1-204ENST00000596842 NOX3Q9HBY0 568 aa14.02□□□□□ -0.17
UPF1-204ENST00000596842 TMEM72A0PK05 275 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 C7orf66A4D0T2 115 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 VEGFBP49765 207 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 SFRP5Q5T4F7 317 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 PAQR7Q86WK9 346 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 LHFPL5Q8TAF8 219 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 FAM3CQ92520 227 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 ZNF764Q96H86 408 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms