RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 DCLRE1BQ9H816 532 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 GPN2Q9H9Y4 310 aaPredicted RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 HINT3Q9NQE9 182 aaKnown RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 FBXO6Q9NRD1 293 aaPredicted RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 FGF21Q9NSA1 209 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 WWOXQ9NZC7 414 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 BTRCQ9Y297 605 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 PIGLQ9Y2B2 252 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 DHRS7Q9Y394 339 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CFAP47Q6ZTR5 3102 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 MGAQ8IWI9 3026 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 PIEZO2Q9H5I5 2752 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 A0A0J9YY10 115 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 LRRC3CA6NJW4 275 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 E7EQ34 232 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 E7ESA3 106 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 K7ENP7 123 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 BTN3A3O00478 584 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ARPC3O15145 178 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 RAD51CO43502 376 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 PLPP2O43688 288 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 OR10H2O60403 315 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 CLPXO76031 633 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 C1orf105O95561 183 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ECDO95905 644 aaPredicted RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 C8GP07360 202 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 NUDT17P0C025 328 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 CMPK1P30085 196 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 SLC1A2P43004 574 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 RPL21P46778 160 aaKnown RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 SLC6A8P48029 635 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 P2RX3P56373 397 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 SELENOVP59797 346 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 TUBA4AP68366 448 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 SLC3A1Q07837 685 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 C2orf54Q08AI8 447 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 MERTKQ12866 999 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 TRIP10Q15642 601 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 AWAT1Q58HT5 328 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 NSUN5P2Q63ZY6 315 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 STEAP4Q687X5 459 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 DUPD1Q68J44 220 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 FAM45BPQ6NSW5 357 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ZNF600Q6ZNG1 722 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 C3orf62Q6ZUJ4 267 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 TMPRSS11FQ6ZWK6 438 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 CYS1Q717R9 158 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 TRIM73Q86UV7 250 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 SLC26A11Q86WA9 606 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ADGRG3Q86Y34 549 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 PARP16Q8N5Y8 322 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 CEP112Q8N8E3 955 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ASCC1Q8N9N2 400 aaKnown RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 FBXO36Q8NEA4 188 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ANGPTL6Q8NI99 470 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 FAM45AQ8TCE6 357 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 GPX8Q8TED1 209 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 SLC44A1Q8WWI5 657 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 MCHR2Q969V1 340 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ZG16BQ96DA0 208 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ZNF479Q96JC4 524 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 GPR21Q99679 349 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 CTRCQ99895 268 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 PITPNM3Q9BZ71 974 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ROPN1BQ9BZX4 212 aaPredicted RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 PCBD2Q9H0N5 130 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 PRORYQ9H606 182 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 GEMIN7Q9H840 131 aaKnown RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 ACTR5Q9H9F9 607 aaPredicted RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 ZNF160Q9HCG1 818 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 RAB9BQ9NP90 201 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 ACSS1Q9NUB1 689 aaPredicted RBP5.48□□□□□ -1.53
VPS53-212ENST00000572259 ERVK-18Q9QC07 812 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 PILRAQ9UKJ1 303 aa5.48□□□□□ -1.53
VPS53-212ENST00000572259 C12orf71A8MTZ7 269 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 C21orf140B9A014 251 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TMEM150CB9EJG8 249 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GFYI3L273 518 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TXNDC9O14530 226 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 ABCD4O14678 606 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 KLF11O14901 512 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SLC22A2O15244 555 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SCO2O43819 266 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SRPX2O60687 465 aaPredicted RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 PSIP1O75475 530 aaKnown RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 BANF1O75531 89 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SCRG1O75711 98 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 C1QL1O75973 258 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 OR2B3O76000 313 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SYNGR4O95473 234 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SYF2O95926 243 aaKnown RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 CLPTM1O96005 669 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 IGHV2-70P01814 119 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 CHRNGP07510 517 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 NHLRC4P0CG21 123 aaPredicted RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 FOLR1P15328 257 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 ST6GAL1P15907 406 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 UGT2B7P16662 529 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TCN2P20062 427 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 HRH2P25021 359 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms