RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LMF1Q96S06 567 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 C8orf33Q9H7E9 229 aaPredicted RBP20.81■□□□□ 0.92
VPS53-211ENST00000571805 TEKT2Q9UIF3 430 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 SLCO1B1Q9Y6L6 691 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 C4orf47A7E2U8 309 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 GLCEO94923 617 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 NSA2O95478 260 aaKnown RBP20.81■□□□□ 0.92
VPS53-211ENST00000571805 CDKN2AP42771 156 aaKnown RBP20.81■□□□□ 0.92
VPS53-211ENST00000571805 PRPS1P60891 318 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 HSF2Q03933 536 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 KLF9Q13886 244 aaPredicted RBP20.81■□□□□ 0.92
VPS53-211ENST00000571805 CMTM4Q8IZR5 234 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 FAM71CQ8NEG0 241 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 ZNF578Q96N58 590 aaPredicted RBP20.81■□□□□ 0.92
VPS53-211ENST00000571805 MAP3K3Q99759 626 aa20.81■□□□□ 0.92
VPS53-211ENST00000571805 ZNF879B4DU55 563 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 PRKNO60260 465 aaPredicted RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 ADRB1P08588 477 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 STOMP27105 288 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 CCR6P51684 374 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 NANOS3P60323 173 aaKnown RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 SKP1P63208 163 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 UBE2NLQ5JXB2 153 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 OR6C4Q8NGE1 309 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 ADAMTS14Q8WXS8 1223 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 MRPL48Q96GC5 212 aaKnown RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 TOE1Q96GM8 510 aaKnown RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 COPZ2Q9P299 210 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 MPDZO75970 2070 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 USP34Q70CQ2 3546 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 TRABD2BA6NFA1 517 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 ZNF749O43361 778 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 MAZP56270 477 aaKnown RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 GNG2P59768 71 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 FNDC7Q5VTL7 733 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 ZNF671Q8TAW3 534 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 SMIM4Q8WVI0 70 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 RGP1Q92546 391 aaPredicted RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 Q96M85 177 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 OR2M2Q96R28 347 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 C7orf50Q9BRJ6 194 aaKnown RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 OR51J1Q9H342 316 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 EMC7Q9NPA0 242 aa20.8■□□□□ 0.92
VPS53-211ENST00000571805 TMEM184BQ9Y519 407 aaPredicted RBP20.8■□□□□ 0.92
VPS53-211ENST00000571805 FAM171A2A8MVW0 826 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 PSMD9O00233 223 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 OIP5O43482 229 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 AQP2P41181 271 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 CD276Q5ZPR3 534 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 LEG1Q6P5S2 330 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 FAM199XQ6PEV8 388 aaPredicted RBP20.79■□□□□ 0.92
VPS53-211ENST00000571805 ZNF440Q8IYI8 595 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 IZUMO1Q8IYV9 350 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 GATSQ8NAP1 163 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 ADAMTS18Q8TE60 1221 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 PHF21AQ96BD5 680 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 TCTN2Q96GX1 697 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 ALG12Q9BV10 488 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 LRRC61Q9BV99 259 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 WSB2Q9NYS7 404 aaPredicted RBP20.79■□□□□ 0.92
VPS53-211ENST00000571805 MSRAQ9UJ68 235 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 CYP8B1Q9UNU6 501 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 ZNF281Q9Y2X9 895 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 SHISA7A6NL88 538 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 IGLV3-19P01714 112 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 WNT1P04628 370 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 MAGEB1P43366 347 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 DYRK1AQ13627 763 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 CCINQ13939 588 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 CD226Q15762 336 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 COL13A1Q5TAT6 717 aaPredicted RBP20.79■□□□□ 0.92
VPS53-211ENST00000571805 MTFR2Q6P444 385 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 FAM122BQ7Z309 247 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 ATG4DQ86TL0 474 aaPredicted RBP20.79■□□□□ 0.92
VPS53-211ENST00000571805 EXD3Q8N9H8 876 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 LRRC75AQ8NAA5 344 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 LIPHQ8WWY8 451 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 ZFP64Q9NPA5 681 aa20.79■□□□□ 0.92
VPS53-211ENST00000571805 MRPL39Q9NYK5 338 aaKnown RBP20.79■□□□□ 0.92
VPS53-211ENST00000571805 ACOD1A6NK06 481 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 BLOC1S5-TXNDC5H3BN57 136 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZFPL1O95159 310 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 GRPRP30550 384 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 GABRA4P48169 554 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 HSD17B7P56937 341 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZNF74Q16587 644 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 WBP2NLQ6ICG8 309 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZNF687Q8N1G0 1237 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZNF285Q96NJ3 590 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 CCNL2Q96S94 520 aaPredicted RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 AUNIPQ9H7T9 357 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZNF346Q9UL40 294 aaKnown RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 HIF3AQ9Y2N7 669 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 A0A1B0GVT2 93 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ELOA3DA6NLF2 546 aaPredicted RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 IFITM5A6NNB3 132 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 IGF2P01344 180 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 MT-ND4P03905 459 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 IFNA16P05015 189 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms