RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KITP10721 976 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 GTDC1Q4AE62 458 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 SLC9B1Q4ZJI4 515 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ATG16L1Q676U5 607 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 NXNQ6DKJ4 435 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 TMEM225Q6GV28 225 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 MAVSQ7Z434 540 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 EPHX4Q8IUS5 362 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 OR1K1Q8NGR3 316 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 BCL2L2Q92843 193 aaPredicted RBP14.93□□□□□ -0.02
CLN3-216ENST00000565316 SLC35B4Q969S0 331 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ZBTB9Q96C00 473 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 TMEM19Q96HH6 336 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ITCHQ96J02 903 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ZNF317Q96PQ6 595 aaPredicted RBP14.93□□□□□ -0.02
CLN3-216ENST00000565316 RMND5AQ9H871 391 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 MANSC1Q9H8J5 431 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ADPRHL2Q9NX46 363 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ZNF232Q9UNY5 417 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 MOKQ9UQ07 419 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 RASD1Q9Y272 281 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 SVEP1Q4LDE5 3571 aa14.93□□□□□ -0.02
CLN3-216ENST00000565316 ARPC4-TTLL3A0A0A6YYG9 625 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 IGHV1-18A0A0C4DH31 117 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 FTCDNL1E5RQL4 147 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 ZNF587BE7ETH6 402 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 KLF11O14901 512 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 FZD7O75084 574 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 LGI1O95970 557 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 FAM157CP0CG43 387 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 SELENOPP49908 381 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 LGALS3BPQ08380 585 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 C3orf36Q3SXR2 165 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 TBRG1Q3YBR2 411 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 RPS26P11Q5JNZ5 115 aaPredicted RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 PRAMEF8Q5VWM4 474 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 PRAMEF7Q5VXH5 474 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 LINGO2Q7L985 606 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 SERPINA11Q86U17 422 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 MFSD8Q8NHS3 518 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 MAGEE2Q8TD90 523 aaPredicted RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 VPS33AQ96AX1 596 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 SLC38A2Q96QD8 506 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 ARMC7Q9H6L4 198 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 BCL2L10Q9HD36 194 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 CRNNQ9UBG3 495 aaPredicted RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 CDC42EP3Q9UKI2 254 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 IFT52Q9Y366 437 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 YLPM1P49750 1951 aaKnown RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 RNF212BA8MTL3 300 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 VWC2LB2RUY7 222 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 KRT33AO76009 404 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 ANP32DO95626 131 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 BMP2P12643 396 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 CDH2P19022 906 aaPredicted RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 NCF2P19878 526 aaPredicted RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 USF1P22415 310 aaPredicted RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 POLR2JP52435 117 aaKnown RBP14.92□□□□□ -0.02
CLN3-216ENST00000565316 FAM169BQ8N8A8 192 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 GTF2H4Q92759 462 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 OR52B2Q96RD2 323 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 KATNB1Q9BVA0 655 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 PTDSS2Q9BVG9 487 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 LINC00470Q9BZP3 86 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 A4GALTQ9NPC4 353 aa14.92□□□□□ -0.02
CLN3-216ENST00000565316 ARFGEF3Q5TH69 2177 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 TMEM247A6NEH6 219 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 UBDO15205 165 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 UPK3AO75631 287 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 LY6HO94772 140 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 ZNF432O94892 652 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 IGHV4-31P0DP07 118 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 HOXB1P14653 301 aaPredicted RBP14.91□□□□□ -0.02
CLN3-216ENST00000565316 HOXB9P17482 250 aaPredicted RBP14.91□□□□□ -0.02
CLN3-216ENST00000565316 EGR4Q05215 589 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 RGNQ15493 299 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 ZNF311Q5JNZ3 666 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 CYB5R2Q6BCY4 276 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 NIPAL3Q6P499 406 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 ANKRD16Q6P6B7 361 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 C6orf89Q6UWU4 347 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 ANKK1Q8NFD2 765 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 OR9I1Q8NGQ6 314 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 MGARPQ8TDB4 240 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 FBXO17Q96EF6 278 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 KCNK17Q96T54 332 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 PAIP1Q9H074 479 aaKnown RBP14.91□□□□□ -0.02
CLN3-216ENST00000565316 NELFAQ9H3P2 528 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 MOV10Q9HCE1 1003 aaKnown RBP14.91□□□□□ -0.02
CLN3-216ENST00000565316 PCDHB14Q9Y5E9 798 aa14.91□□□□□ -0.02
CLN3-216ENST00000565316 RPL36A-HNRNPH2H7BZ11 118 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 NDUFS8O00217 210 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 AHSA1O95433 338 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 IGLV1-44P01699 117 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 NUDT7P0C024 238 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 PNMTP11086 282 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 SERPINF1P36955 418 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 MRPL19P49406 292 aaKnown RBP14.9□□□□□ -0.02
CLN3-216ENST00000565316 SH3BGRP55822 239 aaPredicted RBP14.9□□□□□ -0.02
CLN3-216ENST00000565316 UBE2NP61088 152 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms