RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 AHSA1O95433 338 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 PNMTP11086 282 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 GPX2P18283 190 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 PTAFRP25105 342 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 MPGP29372 298 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 ACVR1BP36896 505 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 RPS5P46782 204 aaKnown RBP9.48□□□□□ -0.89
VPS39-208ENST00000564994 SELENOPP49908 381 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 VEZF1Q14119 521 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 SQLEQ14534 574 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 TMEM225Q6GV28 225 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 C11orf71Q6IPW1 123 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 REEP3Q6NUK4 255 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 DHRS4L2Q6PKH6 230 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 SLC22A25Q6T423 547 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 C6orf89Q6UWU4 347 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 DNM1P46Q6ZS02 220 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 LINGO2Q7L985 606 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 C17orf78Q8N4C9 275 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 LSMEM1Q8N8F7 131 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 MAPK1IP1LQ8NDC0 245 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 MFSD8Q8NHS3 518 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 DYDC1Q8WWB3 177 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 CKAP2Q8WWK9 683 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 RADILQ96JH8 1075 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 WFDC6Q9BQY6 131 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 CPPED1Q9BRF8 314 aaPredicted RBP9.48□□□□□ -0.89
VPS39-208ENST00000564994 GRIP2Q9C0E4 1043 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 PIF1Q9H611 641 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 ZNF385DQ9H6B1 395 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 CACYBPQ9HB71 228 aaKnown RBP9.48□□□□□ -0.89
VPS39-208ENST00000564994 INTS9Q9NV88 658 aaKnown RBP9.48□□□□□ -0.89
VPS39-208ENST00000564994 TMEM45AQ9NWC5 275 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 MGAT4BQ9UQ53 548 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 B3GALT5Q9Y2C3 310 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 A0A1B0GWA3 101 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 ELOA3DA6NLF2 546 aaPredicted RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 HMGB1P1B2RPK0 211 aaPredicted RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 RNF223E7ERA6 249 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 TPST2O60704 377 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 FZD7O75084 574 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 UPK3AO75631 287 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 VAMP5O95183 116 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 CDH2P19022 906 aaPredicted RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 PPIBP23284 216 aaKnown RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 PCSK6P29122 969 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 AQP1P29972 269 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 TTKP33981 857 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 IRX1P78414 480 aaPredicted RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 TGFBR3Q03167 851 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 SCARB2Q14108 478 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 ETFDHQ16134 617 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 ELOA3BQ3SY89 546 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 HIKESHIQ53FT3 197 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 RUNDC3AQ59EK9 446 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 NIPAL3Q6P499 406 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 KLHL17Q6TDP4 642 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 POMGNT2Q8NAT1 580 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 ELOA3Q8NG57 546 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 STON2Q8WXE9 905 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 TAAR8Q969N4 342 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 SLC25A36Q96CQ1 311 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 BOD1Q96IK1 185 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 MAGEB18Q96M61 343 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 ALKBH3Q96Q83 286 aaPredicted RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 DHRS9Q9BPW9 319 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 ALG2Q9H553 416 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 TMEM38AQ9H6F2 299 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 C12orf10Q9HB07 376 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 FAIMQ9NVQ4 179 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 B3GAT1Q9P2W7 334 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 RASD1Q9Y272 281 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 AMDHD2Q9Y303 409 aa9.47□□□□□ -0.89
VPS39-208ENST00000564994 CHD3Q12873 2000 aaKnown RBP9.47□□□□□ -0.89
VPS39-208ENST00000564994 INAFM1C9JVW0 142 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 ZNF432O94892 652 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 LGI1O95970 557 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 H2AFXP16104 143 aaPredicted RBP9.46□□□□□ -0.9
VPS39-208ENST00000564994 PRPS1P60891 318 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 DMTNQ08495 405 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 SELPLGQ14242 412 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 TBRG1Q3YBR2 411 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 AGAP6Q5VW22 663 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 HDXQ7Z353 690 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 RETREG3Q86VR2 466 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 PRIMA1Q86XR5 153 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 KRT73Q86Y46 540 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 PTOV1Q86YD1 416 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 MUC15Q8N387 334 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 OR1K1Q8NGR3 316 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 CACNG6Q9BXT2 260 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 REG4Q9BYZ8 158 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 NELFAQ9H3P2 528 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 CBLN4Q9NTU7 201 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 RPS6KB2Q9UBS0 482 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 POU2F3Q9UKI9 436 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 CUBNO60494 3623 aa9.46□□□□□ -0.9
VPS39-208ENST00000564994 ATRQ13535 2644 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 IGHV1-18A0A0C4DH31 117 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms