RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 GABRA6Q16445 453 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 DUSP7Q16829 419 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 RABL3Q5HYI8 236 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 REP15Q6BDI9 236 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 ADAM5Q6NVV9 412 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 CREB3L2Q70SY1 520 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 NET1Q7Z628 596 aaPredicted RBP13.78□□□□□ -0.2
VPS39-203ENST00000561797 RANBP3LQ86VV4 465 aaPredicted RBP13.78□□□□□ -0.2
VPS39-203ENST00000561797 SNX32Q86XE0 403 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 KRTAP1-3Q8IUG1 177 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 ZNF611Q8N823 705 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 KBTBD8Q8NFY9 601 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 SLC26A7Q8TE54 656 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 TMEM171Q8WVE6 324 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 TAAR8Q969N4 342 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 LRRC58Q96CX6 371 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 MCHR1Q99705 422 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 C1QTNF6Q9BXI9 259 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 SLCO5A1Q9H2Y9 848 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 MED4Q9NPJ6 270 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 NPAP1Q9NZP6 1156 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 SEC14L4Q9UDX3 406 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 RASD1Q9Y272 281 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 IGKV1D-42A0A075B6H8 117 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 PDLIM1O00151 329 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 OR2T1O43869 369 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 KRT33AO76009 404 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 LGI1O95970 557 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 PCGF2P35227 344 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 MDH1P40925 334 aaKnown RBP13.77□□□□□ -0.21
VPS39-203ENST00000561797 SELENOPP49908 381 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 GZMMP51124 257 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 IL1RL1Q01638 556 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 LGALS3BPQ08380 585 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 MAPRE2Q15555 327 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 VMACQ2NL98 169 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 Q5PR19 223 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 SHEQ5VZ18 495 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 FAM91A1Q658Y4 838 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 OR7E24Q6IFN5 339 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 NIPAL3Q6P499 406 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 PATL1Q86TB9 770 aaKnown RBP13.77□□□□□ -0.21
VPS39-203ENST00000561797 EPHX4Q8IUS5 362 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 SLC30A8Q8IWU4 369 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 LRRC75A-AS1Q8N1F1 130 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 GPR32P1Q8NGA4 272 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 VANGL1Q8TAA9 524 aaPredicted RBP13.77□□□□□ -0.21
VPS39-203ENST00000561797 FBXW5Q969U6 566 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 MUS81Q96NY9 551 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 ARHGDIGQ99819 225 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 ECSITQ9BQ95 431 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 CCDC134Q9H6E4 229 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 EVA1AQ9H8M9 152 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 MRGBPQ9NV56 204 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 KLHL14Q9P2G3 628 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 LAMP3Q9UQV4 416 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 SLC25A15Q9Y619 301 aa13.77□□□□□ -0.21
VPS39-203ENST00000561797 MAP1AP78559 2803 aaPredicted RBP13.77□□□□□ -0.21
VPS39-203ENST00000561797 TRAV36DV7A0A075B6V5 113 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 A0A087WUJ7 227 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 A0A0B4J2E0 115 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 A0A1B0GX12 115 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 CPSF4LA6NMK7 179 aaKnown RBP13.76□□□□□ -0.21
VPS39-203ENST00000561797 BBIP1A8MTZ0 92 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 M0R082 166 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 ZNF43P17038 809 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 GRPRP30550 384 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 CDH12P55289 794 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 CLDN17P56750 224 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 NRF1Q16656 503 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 ZNF672Q499Z4 452 aaPredicted RBP13.76□□□□□ -0.21
VPS39-203ENST00000561797 FAM69AQ5T7M9 428 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 INTS11Q5TA45 600 aaKnown RBP13.76□□□□□ -0.21
VPS39-203ENST00000561797 C5orf46Q6UWT4 87 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 WDR31Q8NA23 367 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 POMGNT2Q8NAT1 580 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 ZNF417Q8TAU3 575 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 TAMM41Q96BW9 452 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 OXGR1Q96P68 337 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 ZNF587Q96SQ5 575 aaPredicted RBP13.76□□□□□ -0.21
VPS39-203ENST00000561797 SH3GL1Q99961 368 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 USP22Q9UPT9 525 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 CAPN7Q9Y6W3 813 aa13.76□□□□□ -0.21
VPS39-203ENST00000561797 M0R1B8 84 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 FXYD1O00168 92 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 ABCD4O14678 606 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 AIM2O14862 343 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 C8BP07358 591 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 CD247P20963 164 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 MPGP29372 298 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 PTH2RP49190 550 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 TGFBR3Q03167 851 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 NPTX1Q15818 432 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 COQ5Q5HYK3 327 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 SSX8Q7RTT4 187 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 ABHD12BQ7Z5M8 362 aaPredicted RBP13.75□□□□□ -0.21
VPS39-203ENST00000561797 RBM45Q8IUH3 476 aaKnown RBP13.75□□□□□ -0.21
VPS39-203ENST00000561797 PIAS4Q8N2W9 510 aaPredicted RBP13.75□□□□□ -0.21
VPS39-203ENST00000561797 C10orf53Q8N6V4 93 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 PCYOX1LQ8NBM8 494 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms