RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PLAURQ03405 335 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 LARS2Q15031 903 aaKnown RBP7.98□□□□□ -1.13
HDDC3-204ENST00000559834 ADIPOQQ15848 244 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 LIN52Q52LA3 116 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 OGFOD2Q6N063 350 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 NIPAL3Q6P499 406 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 VHLLQ6RSH7 139 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 CCDC36Q8IYA8 594 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 CADM2Q8N3J6 435 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 RFLNBQ8N5W9 214 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 ANKS4BQ8N8V4 417 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 ANKK1Q8NFD2 765 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 IL17RDQ8NFM7 739 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 OR52P1PQ8NH57 321 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 HPS1Q92902 700 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 ANKRD27Q96NW4 1050 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 NUF2Q9BZD4 464 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 LINC00470Q9BZP3 86 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 PLK3Q9H4B4 646 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 CRNNQ9UBG3 495 aaPredicted RBP7.98□□□□□ -1.13
HDDC3-204ENST00000559834 P2RX2Q9UBL9 471 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 PCDHB14Q9Y5E9 798 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 ARFGEF3Q5TH69 2177 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 MALRD1Q5VYJ5 2156 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 A0A096LPE4 126 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 A0A1W2PPZ6 126 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 TMEM247A6NEH6 219 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 RFXANKO14593 260 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 TCF21O43680 179 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 IL6P05231 212 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 PGRP06401 933 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 GKN3PP0CG01 181 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 DAOP14920 347 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 CBR1P16152 277 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF43P17038 809 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 NPR2P20594 1047 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 PCMT1P22061 227 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 GIFP27352 417 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 GTF2E2P29084 291 aaKnown RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 SRP14P37108 136 aaKnown RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 ACAA2P42765 397 aaKnown RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 SELENOPP49908 381 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 CHN2P52757 468 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 CRISP3P54108 245 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 UFM1P61960 85 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 BNIP2Q12982 314 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 STX3Q13277 289 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 CR1LQ2VPA4 569 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 C1orf140Q5VVS0 124 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 PRAMEF8Q5VWM4 474 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 PRAMEF7Q5VXH5 474 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 IL17RELQ6ZVW7 336 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 GLB1L3Q8NCI6 653 aaPredicted RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 NUP37Q8NFH4 326 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 MFSD8Q8NHS3 518 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 STK35Q8TDR2 534 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 PKNOX2Q96KN3 472 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 TMEM109Q9BVC6 243 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 BPESC1Q9GZL8 116 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF442Q9H7R0 627 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 MEAF6Q9HAF1 191 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 SSU72Q9NP77 194 aaKnown RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 RLIMQ9NVW2 624 aa7.97□□□□□ -1.13
HDDC3-204ENST00000559834 THUMPD1Q9NXG2 353 aaKnown RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 TMEFF2Q9UIK5 374 aaPredicted RBP7.97□□□□□ -1.13
HDDC3-204ENST00000559834 MXRA5Q9NR99 2828 aa7.96□□□□□ -1.13
HDDC3-204ENST00000559834 A0A0G2JPF8 293 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 HNRNPCL2B2RXH8 293 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 HNRNPCL3B7ZW38 293 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 RPL36A-HNRNPH2H7BZ11 118 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 hCG_2039718K7EN88 272 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 NR5A2O00482 541 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 TM9SF1O15321 606 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 RGS16O15492 202 aaPredicted RBP7.96□□□□□ -1.14
HDDC3-204ENST00000559834 OR2T1O43869 369 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 HNRNPCL1O60812 293 aaKnown RBP7.96□□□□□ -1.14
HDDC3-204ENST00000559834 SLC43A1O75387 559 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 UPK3AO75631 287 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 AHSA1O95433 338 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 ANP32DO95626 131 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 IGKV3-15P01624 115 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 IGLV1-44P01699 117 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 GSNP06396 782 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 CECR9P0C854 216 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 HNRNPCL4P0DMR1 293 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 ARR3P36575 388 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 CRATP43155 626 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 P2RY4P51582 365 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 NME5P56597 212 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 ROR2Q01974 943 aaKnown RBP7.96□□□□□ -1.14
HDDC3-204ENST00000559834 C1DQ13901 141 aaKnown RBP7.96□□□□□ -1.14
HDDC3-204ENST00000559834 COX20Q5RI15 118 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 SPATA21Q7Z572 469 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 NET1Q7Z628 596 aaPredicted RBP7.96□□□□□ -1.14
HDDC3-204ENST00000559834 VRK2Q86Y07 508 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 EPHX4Q8IUS5 362 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 ZNF786Q8N393 782 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 GPR137CQ8N3F9 429 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 LINC01356Q8N9X3 169 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 PNPT1Q8TCS8 783 aaKnown RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms