RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 SLC46A3Q7Z3Q1 461 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 NANOGNBQ7Z5D8 188 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 KDM8Q8N371 416 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 OR9Q2Q8NGE9 314 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 OR4C15Q8NGM1 316 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 OR6S1Q8NH40 331 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 MBD3L2Q8NHZ7 208 aaPredicted RBP12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF775Q96BV0 537 aaPredicted RBP12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 FUZQ9BT04 418 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 SEMA6AQ9H2E6 1030 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 FKRPQ9H9S5 495 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 S100A14Q9HCY8 104 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 CHST11Q9NPF2 352 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 TMEM5Q9Y2B1 443 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 CORINQ9Y5Q5 1042 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF462Q96JM2 2506 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 AQP7P3A6NL99 342 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 BLOC1S5-TXNDC5H3BN57 136 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 H3BNX3 289 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 TOXO94900 526 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 DNAJA1P31689 397 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 IFNGR2P38484 337 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 LIMS1P48059 325 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 CTBP2P56545 445 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 RASGEF1BQ0VAM2 473 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 GTF2IRD2BQ6EKJ0 949 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 OR2A2Q6IF42 318 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 H1FNTQ75WM6 255 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 GTF2IRD2Q86UP8 949 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 SLC43A2Q8N370 569 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 CNEP1R1Q8N9A8 125 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 OR13C2Q8NGS9 318 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 RND1Q92730 232 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 DMRTA2Q96SC8 542 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 BDH2Q9BUT1 245 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 RNF122Q9H9V4 155 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 KLHL9Q9P2J3 617 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF229Q9UJW7 825 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 COL6A6A6NMZ7 2263 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 C11orf98E9PRG8 122 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 H0YHG0 523 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 CYTIPO60759 359 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 BAG2O95816 211 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 ADORA3P0DMS8 318 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 TMIGD3P0DMS9 266 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 POU2F1P14859 743 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 ARHGDIAP52565 204 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 HMGA2P52926 109 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 H3F3AP84243 136 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 RNPS1Q15287 305 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 MICAQ29983 383 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 ZER1Q7Z7L7 766 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 TMEM179BQ7Z7N9 219 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 OAFQ86UD1 273 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 CCDC71Q8IV32 467 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 HS3ST5Q8IZT8 346 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 AQP11Q8NBQ7 271 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 NAXEQ8NCW5 288 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 OR10G2Q8NGC3 310 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 OR5J2Q8NH18 312 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 OR51A7Q8NH64 312 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 CCDC120Q96HB5 630 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 PKP2Q99959 881 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 PDP1Q9P0J1 537 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 SLC5A6Q9Y289 635 aa12.53□□□□□ -0.4
VIPAS39-208ENST00000556412 HEATR5AQ86XA9 2040 aa12.52□□□□□ -0.4
VIPAS39-208ENST00000556412 TRAV27A0A087WT01 109 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 CDC42EP2O14613 210 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 ASAH2BP0C7U1 165 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 TIMP3P35625 211 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 OMPP47874 163 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 FOXF2Q12947 444 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 C1DQ13901 141 aaKnown RBP12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 RIPPLY2Q5TAB7 128 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 ABLIM2Q6H8Q1 611 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 HMBOX1Q6NT76 420 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 PGBD2Q6P3X8 592 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 TUSC5Q8IXB3 177 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 SCAIQ8N9R8 606 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 ICA1LQ8NDH6 482 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 GIPC3Q8TF64 312 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 GTPBP3Q969Y2 492 aaKnown RBP12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 PSD2Q9BQI7 771 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 NTN4Q9HB63 628 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 MRPL39Q9NYK5 338 aaKnown RBP12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 RASD1Q9Y272 281 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 B3GALT5Q9Y2C3 310 aa12.52□□□□□ -0.41
VIPAS39-208ENST00000556412 A0A0G2JNJ9 132 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 HTR3EA5X5Y0 456 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 PLPP3O14495 311 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 RNF13O43567 381 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 RCBTB2O95199 551 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 IGF2P01344 180 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 ZNF23P17027 643 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 PRKACGP22612 351 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 ELF3P78545 371 aaPredicted RBP12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 PUDPQ08623 228 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 TMEM201Q5SNT2 666 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 TMPRSS11FQ6ZWK6 438 aa12.51□□□□□ -0.41
VIPAS39-208ENST00000556412 LINC00471Q8N535 108 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms