RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SCRG1O75711 98 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 TFP02787 698 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 IFNW1P05000 195 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 H2AFB1P0C5Y9 115 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ATXN8OSP0DMR3 200 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 LAMP1P11279 417 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 LIFP15018 202 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CALCRP30988 508 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 GDI2P50395 445 aaKnown RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 MAP4K2Q12851 820 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 GAB1Q13480 694 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SLBPQ14493 270 aaKnown RBP eCLIP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SYT14P1Q58G82 188 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 MANEAQ5SRI9 462 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 GCNT6Q5T4J0 391 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 B3GNTL1Q67FW5 361 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ADNP2Q6IQ32 1131 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 PYHIN1Q6K0P9 492 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 MED27Q6P2C8 311 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CORO6Q6QEF8 472 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 FIGLAQ6QHK4 219 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 BTN2A1Q7KYR7 527 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SHFQ7M4L6 423 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ZER1Q7Z7L7 766 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 C17orf64Q86WR6 236 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ARIH2OSQ8N7S6 290 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF527Q8NB42 609 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF740Q8NDX6 193 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 OR2L3Q8NG85 312 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 OR56B4Q8NH76 319 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 NFKBIDQ8NI38 313 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SLC22A18Q96BI1 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 C11orf24Q96F05 449 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 TCTN2Q96GX1 697 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 C10orf90Q96M02 699 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 PRAP1Q96NZ9 151 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SPATA5L1Q9BVQ7 753 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CHIAQ9BZP6 476 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SAP130Q9H0E3 1048 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 PCBD2Q9H0N5 130 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DNTTIP1Q9H147 329 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SEMA3GQ9NS98 782 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 BTNL2Q9UIR0 455 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 EDARQ9UNE0 448 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SLC6A5Q9Y345 797 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 EXOSC1Q9Y3B2 195 aaKnown RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 MRPS18BQ9Y676 258 aaKnown RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 TRBV4-1A0A0J9YWV2 114 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 A0A1B0GW55 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 TRBC2A0A5B9 178 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ANKDD1BA6NHY2 528 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ANXA2P2A6NMY6 339 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 NPIPB8E9PQR5 432 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 H0YIV9 168 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 K7ENP7 123 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF593O00488 134 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 OR10H3O60404 316 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SNAPINO95295 136 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 GLAP06280 429 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 EIF4EP06730 217 aaKnown RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 FABP1P07148 127 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4L2P0CJ85 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4L3P0CJ86 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4L4P0CJ87 422 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4L5P0CJ88 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4L6P0CJ89 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4L7P0CJ90 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ETFAP13804 333 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 NFYAP23511 347 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CCR6P51684 374 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 TMPRSS3P57727 454 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 RAB8AP61006 207 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 RAB40BQ12829 278 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SLC36A2Q495M3 483 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CPTPQ5TA50 214 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ANXA8L1Q5VT79 327 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 FAM69BQ5VUD6 431 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 INO80CQ6PI98 192 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 C6orf15Q6UXA7 325 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 B3GLCTQ6Y288 498 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 PRICKLE2Q7Z3G6 844 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 OAFQ86UD1 273 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SIAH3Q8IW03 269 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CCDC36Q8IYA8 594 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 LILRB2Q8N423 598 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SAMD12Q8N8I0 201 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 OR1S1Q8NH92 325 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 WDR20Q8TBZ3 569 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 WDR34Q96EX3 536 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 LRR1Q96L50 414 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF582Q96NG8 517 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ARHGAP9Q9BRR9 750 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 EFCAB11Q9BUY7 163 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 RAB11FIP5Q9BXF6 653 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 POLDIP3Q9BY77 421 aaKnown RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 POLR2J3Q9H1A7 115 aaKnown RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SLC6A20Q9NP91 592 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 FGF20Q9NP95 211 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 STARD5Q9NSY2 213 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 BABAM2Q9NXR7 383 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms