RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CCDC71Q8IV32 467 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 PYROXD2Q8N2H3 581 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 DDHD1Q8NEL9 900 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 OR13C2Q8NGS9 318 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 TRMT10AQ8TBZ6 339 aaKnown RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 MRPL24Q96A35 216 aaKnown RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 RMND5BQ96G75 393 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 TBCDQ9BTW9 1192 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 NDUFAF3Q9BU61 184 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 TDRD1Q9BXT4 1180 aaKnown RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 NLNQ9BYT8 704 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 UBXN6Q9BZV1 441 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 SHARPINQ9H0F6 387 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 C1orf123Q9NWV4 160 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 P2RX2Q9UBL9 471 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 LHX3Q9UBR4 397 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 RNF14Q9UBS8 474 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF580Q9UK33 172 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 VANGL2Q9ULK5 521 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 CLEC4AQ9UMR7 237 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 FOXJ3Q9UPW0 622 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 OR10H1Q9Y4A9 318 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 IGHV5-51A0A0C4DH38 117 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 IGHV4-61A0A0C4DH41 118 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 LRRIQ3A6PVS8 624 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 F5H5T6 163 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 H0Y8G0 127 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 SH2D1BO14796 132 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 PRKNO60260 465 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 CDC123O75794 336 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 ZMPSTE24O75844 475 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 IGHV4-59P01825 116 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 PRSS1P07477 247 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 ZCCHC18P0CG32 403 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 AMD1P17707 334 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 UGT1A4P22310 534 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 PTPN6P29350 595 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DSCR9P59020 149 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 CBX1P83916 185 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 ILF3Q12906 894 aaKnown RBP eCLIP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 BNIP1Q12981 228 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 EXOSC2Q13868 293 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 EXT1Q16394 746 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 SGSM1Q2NKQ1 1148 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 GOLGA7BQ2TAP0 167 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TMEM52BQ4KMG9 183 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 FAM106AQ4KMX7 169 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 XKR6Q5GH73 641 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TECRLQ5HYJ1 363 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TCHHL1Q5QJ38 904 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MLIPQ5VWP3 458 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 SCYL2Q6P3W7 929 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 NIPAL3Q6P499 406 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DOK6Q6PKX4 331 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 WASH2PQ6VEQ5 465 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 GDPD4Q6W3E5 623 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DPY19L2P2Q6ZN68 376 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TAC4Q86UU9 113 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 SLC22A16Q86VW1 577 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DOLPP1Q86YN1 238 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 CDH26Q8IXH8 852 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 UBQLNLQ8IYU4 475 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 LINC00518Q8N0U6 118 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 ZCCHC7Q8N3Z6 543 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MARVELD2Q8N4S9 558 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 STPG4Q8N801 248 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 EIF1ADQ8N9N8 165 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TMEM178AQ8NBL3 297 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 POC1AQ8NBT0 407 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 OR5T2Q8NGG2 359 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 OR4C3Q8NH37 302 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 OR6S1Q8NH40 331 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 AGAP11Q8TF27 550 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MCHR2Q969V1 340 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DNAJC19Q96DA6 116 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DHTKD1Q96HY7 919 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TPD52L3Q96J77 140 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 ANKRD27Q96NW4 1050 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 RPRD1AQ96P16 312 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 RAB34Q9BZG1 259 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 KAT8Q9H7Z6 458 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 SLC52A3Q9NQ40 469 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 INTS9Q9NV88 658 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 TECRQ9NZ01 308 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 EIF3KQ9UBQ5 218 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MIOXQ9UGB7 285 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 BAIAP2L1Q9UHR4 511 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MRPS33Q9Y291 106 aaKnown RBP3.24□□□□□ -1.89
LIMA1-208ENST00000551691 PPP2R2CQ9Y2T4 447 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF175Q9Y473 711 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 WIPI2Q9Y4P8 454 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 PCDHGB1Q9Y5G3 927 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MAD1L1Q9Y6D9 718 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 DYSFO75923 2080 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 VWFP04275 2813 aa3.24□□□□□ -1.89
LIMA1-208ENST00000551691 MPDZO75970 2070 aa3.23□□□□□ -1.89
LIMA1-208ENST00000551691 GSAPA4D1B5 854 aa3.23□□□□□ -1.89
LIMA1-208ENST00000551691 H3BTX0 84 aa3.23□□□□□ -1.89
LIMA1-208ENST00000551691 SURF4O15260 269 aa3.23□□□□□ -1.89
LIMA1-208ENST00000551691 SIGLEC5O15389 551 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms