RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ELOA3DA6NLF2 546 aaPredicted RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 VSTM5A8MXK1 200 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 RNF223E7ERA6 249 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ZNF587BE7ETH6 402 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 FRS3O43559 492 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 TLX2O43763 284 aaPredicted RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 AKAP8O43823 692 aaKnown RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 IGHV4-39P01824 125 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 VIMP08670 466 aaKnown RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 PCSK6P29122 969 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 APOBEC3AP31941 199 aaPredicted RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 IDH3AP50213 366 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ATP4BP51164 291 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 SH3BGRP55822 239 aaPredicted RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 DMTNQ08495 405 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 C3orf36Q3SXR2 165 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ELOA3BQ3SY89 546 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 GTDC1Q4AE62 458 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 GCNT6Q5T4J0 391 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 FAM91A1Q658Y4 838 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 SLC2A7Q6PXP3 512 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 C6orf89Q6UWU4 347 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 DNM1P46Q6ZS02 220 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 CREB3L2Q70SY1 520 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 SERPINA11Q86U17 422 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ZIC4Q8N9L1 334 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 WDR31Q8NA23 367 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ELOA3Q8NG57 546 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 DYDC1Q8WWB3 177 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 STON2Q8WXE9 905 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 AURKBQ96GD4 344 aaPredicted RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ATP6V1G3Q96LB4 118 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ZNF385AQ96PM9 386 aaKnown RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ZNF607Q96SK3 696 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 KCNS3Q9BQ31 491 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 LINC00470Q9BZP3 86 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 SLC13A4Q9UKG4 626 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 RCE1Q9Y256 329 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 ATP23Q9Y6H3 246 aa9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 FN1P02751 2386 aaKnown RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 NSD1Q96L73 2696 aaPredicted RBP9.54□□□□□ -0.88
VTI1BP3-201ENST00000550220 LOC102725191A0A1B0GVB3 256 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 TMEM229AB2RXF0 380 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 H7C417 338 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 AIM2O14862 343 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CSF3P09919 207 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 PRG2P13727 222 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 ZNF43P17038 809 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 GPX2P18283 190 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 SLC6A2P23975 617 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 ACVR1BP36896 505 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 P2RY4P51582 365 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 NUDT6P53370 316 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 AQP5P55064 265 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 UBE2NP61088 152 aaKnown RBP9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CDK6Q00534 326 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 BNIP2Q12982 314 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 SQLEQ14534 574 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 RPS26P11Q5JNZ5 115 aaPredicted RBP9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 FAM69AQ5T7M9 428 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 HMBOX1Q6NT76 420 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 ULK3Q6PHR2 472 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 DHRS4L2Q6PKH6 230 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CLEC2AQ6UVW9 174 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CCDC36Q8IYA8 594 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 FAM169BQ8N8A8 192 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 OR6S1Q8NH40 331 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 MAGEE2Q8TD90 523 aaPredicted RBP9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 SLC38A4Q969I6 547 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 MAL2Q969L2 176 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 SLC47A1Q96FL8 570 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 OXGR1Q96P68 337 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 EPYCQ99645 322 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 C1QTNF6Q9BXI9 259 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CACNG6Q9BXT2 260 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 TMEM38AQ9H6F2 299 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 TMEM27Q9HBJ8 222 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CCDC167Q9P0B6 97 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 CHST2Q9Y4C5 530 aa9.53□□□□□ -0.88
VTI1BP3-201ENST00000550220 TRAV36DV7A0A075B6V5 113 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 ARPC4-TTLL3A0A0A6YYG9 625 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 A0A1W2PR80 420 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 HMGB1P1B2RPK0 211 aaPredicted RBP9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 INAFM1C9JVW0 142 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 FTCDNL1E5RQL4 147 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 NR5A2O00482 541 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 SSX4O60224 188 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 FZD7O75084 574 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 SLC43A1O75387 559 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 CRLF1O75462 422 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 CRYAAP02489 173 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 NUDT7P0C024 238 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 ARAFP10398 606 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 HOXB9P17482 250 aaPredicted RBP9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 NCALDP61601 193 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 C1DQ13901 141 aaKnown RBP9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 C9orf135Q5VTT2 229 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 C11orf71Q6IPW1 123 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 NIPAL3Q6P499 406 aa9.52□□□□□ -0.89
VTI1BP3-201ENST00000550220 ANKRD16Q6P6B7 361 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms