RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PYDC2Q56P42 97 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 TCEAL6Q6IPX3 200 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 GDPGP1Q6ZNW5 385 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 KANSL1Q7Z3B3 1105 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 CEACAM19Q7Z692 300 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 OR7G1Q8NGA0 311 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 OR52N1Q8NH53 320 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 SAP25Q8TEE9 199 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 GHSRQ92847 366 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 DAZLQ92904 295 aaKnown RBP10.09□□□□□ -0.79
CUX1-212ENST00000547394 TCEAL3Q969E4 200 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 MMP25Q9NPA2 562 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 VDAC3Q9Y277 283 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 KLHDC2Q9Y2U9 406 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 MMACHCQ9Y4U1 282 aa10.09□□□□□ -0.79
CUX1-212ENST00000547394 TRDV1A0A1B0GX56 115 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 IFNGP01579 166 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 SPI1P17947 270 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 CENPAP49450 140 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 PSMD4P55036 377 aaKnown RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 FOXK1P85037 733 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 ALG10Q5BKT4 473 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 CNIH2Q6PI25 160 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 SLC29A4Q7RTT9 530 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 OR1N1Q8NGS0 311 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 MMP28Q9H239 520 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 ZNF768Q9H5H4 540 aaKnown RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 B3GAT2Q9NPZ5 323 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 ZNF337Q9Y3M9 751 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 CACNA1HO95180 2353 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 A0A075B6Q4 140 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 A8MV72 311 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 CPNE3O75131 537 aaKnown RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 MT-ND5P03915 603 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 HEXBP07686 556 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 CELA2AP08217 269 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 NKX2-5P52952 324 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 ZNF181Q2M3W8 571 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 SLC25A35Q3KQZ1 300 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 RPL13AP3Q6NVV1 102 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 MTFR2Q6P444 385 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 TMEM71Q6P5X7 295 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 NCCRP1Q6ZVX7 275 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 VASH1Q7L8A9 365 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 FAM71CQ8NEG0 241 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 OR5M1Q8NGP8 315 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 SNX33Q8WV41 574 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 TRIM36Q9NQ86 728 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 ICAM5Q9UMF0 924 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 A3GALT2U3KPV4 340 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 IL7P13232 177 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 ZNF28P17035 718 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 CXCR1P25024 350 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 PON3Q15166 354 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 PMS2CLQ68D20 193 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 CD200R1LQ6Q8B3 271 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 WDR74Q6RFH5 385 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 LINC00299Q6ZSB3 139 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 SLC35F2Q8IXU6 374 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 PMM1Q92871 262 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 PELI1Q96FA3 418 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 ZNF578Q96N58 590 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 CNN2Q99439 309 aaKnown RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 NKX3-1Q99801 234 aaPredicted RBP10.08□□□□□ -0.8
CUX1-212ENST00000547394 ATF6BQ99941 703 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 SYT4Q9H2B2 425 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 TMEM185BQ9H7F4 350 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 NRIP3Q9NQ35 241 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 PILRBQ9UKJ0 227 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 DMXL1Q9Y485 3027 aa10.08□□□□□ -0.8
CUX1-212ENST00000547394 TMEM72A0PK05 275 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 BLACEA4D250 179 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 DOK2O60496 412 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 RAD1O60671 282 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 EVI2BP34910 448 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 RAB15P59190 212 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 RNF4P78317 190 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 TMEM44Q2T9K0 475 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 DDI2Q5TDH0 399 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 LRRC69Q6ZNQ3 347 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 ESPNLQ6ZVH7 1005 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 NANOGNBQ7Z5D8 188 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 CMIPQ8IY22 773 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 PELOQ9BRX2 385 aaKnown RBP10.07□□□□□ -0.8
CUX1-212ENST00000547394 SRRQ9GZT4 340 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 MED11Q9P086 117 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 POU2F3Q9UKI9 436 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 TRBV11-1A0A0K0K1C0 115 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 A0A1B0GTQ1 180 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 SAGE2PA6NJ88 616 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 ARHGEF9O43307 516 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 TSPAN2O60636 221 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 RGS9O75916 674 aaPredicted RBP10.07□□□□□ -0.8
CUX1-212ENST00000547394 OR8G3PP0DMU2 310 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 PSKH1P11801 424 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 CCL4P13236 92 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 EIF2B2P49770 351 aaKnown RBP10.07□□□□□ -0.8
CUX1-212ENST00000547394 TPTEP56180 551 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 IL18Q14116 193 aa10.07□□□□□ -0.8
CUX1-212ENST00000547394 MELKQ14680 651 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms