RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 UPRTQ96BW1 309 aa11.91□□□□□ -0.5
PTCH1-212ENST00000546744 TRMT2BQ96GJ1 504 aaKnown RBP11.91□□□□□ -0.5
PTCH1-212ENST00000546744 RNF170Q96K19 258 aa11.91□□□□□ -0.5
PTCH1-212ENST00000546744 PLEKHA2Q9HB19 425 aa11.91□□□□□ -0.5
PTCH1-212ENST00000546744 MCCC2Q9HCC0 563 aa11.91□□□□□ -0.5
PTCH1-212ENST00000546744 RAB22AQ9UL26 194 aa11.91□□□□□ -0.5
PTCH1-212ENST00000546744 GPR34Q9UPC5 381 aa11.91□□□□□ -0.5
PTCH1-212ENST00000546744 ZNF443Q9Y2A4 671 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-212ENST00000546744 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 RTCAO00442 366 aaKnown RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 RRASP10301 218 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 CPN1P15169 458 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 ZXDBP98169 803 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 LMAN2Q12907 356 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 SLC14A1Q13336 389 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TNK1Q13470 666 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 ELAVL3Q14576 367 aaKnown RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 CTSL3PQ5NE16 218 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 LCN10Q6JVE6 187 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 HEPHL1Q6MZM0 1159 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 FBXW12Q6X9E4 464 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 BEND4Q6ZU67 534 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 HORMAD2Q8N7B1 307 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 PDXPQ96GD0 296 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TGIF2Q9GZN2 237 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 CYSLTR2Q9NS75 346 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 POMT1Q9Y6A1 747 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 VSTM2BA6NLU5 285 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 SLC31A1O15431 190 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 NCR1O76036 304 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 OR2C1O95371 312 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 MTHFD2P13995 350 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 CBLP22681 906 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 SNCAP37840 140 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 HOXA1P49639 335 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 DEFB115Q30KQ5 88 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TMEM64Q6YI46 380 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 RNF111Q6ZNA4 994 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 SPICQ8N5J4 248 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 C16orf70Q9BSU1 422 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 NAA11Q9BSU3 229 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 R3HDMLQ9H3Y0 253 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 KCNIP2Q9NS61 270 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 ACER3Q9NUN7 267 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 PLEKHJ1Q9NW61 149 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TAS2R16Q9NYV7 291 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 KLRF1Q9NZS2 232 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 PCDHB10Q9UN67 800 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 V9GYS6 101 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 PPP5D1E7EU14 171 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TP53I11O14683 189 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 BCL2L11O43521 198 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 GATCO43716 136 aaKnown RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 LEFTY1O75610 366 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 ZNF16P17020 682 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 FGF7P21781 194 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 NME2P22392 152 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TACR1P25103 407 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 POLR2HP52434 150 aaKnown RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 COTL1Q14019 142 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 PIP5KL1Q5T9C9 394 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 B3GNTL1Q67FW5 361 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 ADGRE4PQ86SQ3 457 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 SDR9C7Q8NEX9 313 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 OR6S1Q8NH40 331 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TMEM18Q96B42 140 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 GNPNAT1Q96EK6 184 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TSSK2Q96PF2 358 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 LYSMD1Q96S90 227 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 TAF9BQ9HBM6 251 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 PLSCR3Q9NRY6 295 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 ENTPD2Q9Y5L3 495 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 INSL5Q9Y5Q6 135 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 KIF13BQ9NQT8 1826 aa11.9□□□□□ -0.5
PTCH1-212ENST00000546744 DNAJC25-GNG10A0A024R161 153 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 A6NIN4 97 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 HMSDA8MTL9 139 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 TARM1B6A8C7 271 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 AKR7A2O43488 359 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 MBP02144 154 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 TMEM225BP0DP42 221 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 PSMB6P28072 239 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 TSFMP43897 325 aaKnown RBP11.9□□□□□ -0.51
PTCH1-212ENST00000546744 THBS3P49746 956 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 LTB4RQ15722 352 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 MSMO1Q15800 293 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 TRNP1Q6NT89 227 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 MDGA1Q8NFP4 955 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 NANPQ8TBE9 248 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 PCNPQ8WW12 178 aaKnown RBP11.9□□□□□ -0.51
PTCH1-212ENST00000546744 TMEM68Q96MH6 324 aa11.9□□□□□ -0.51
PTCH1-212ENST00000546744 TRBV23OR9-2A0A075B6M9 112 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 CD300LBA8K4G0 201 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 J3QR89 54 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 CCL16O15467 120 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 SRMP19623 302 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 GRPRP30550 384 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 TAF9Q16594 264 aa11.89□□□□□ -0.51
PTCH1-212ENST00000546744 DEFB134Q4QY38 66 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms