RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	HOXD4	P09016	255 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RPL4	P36578	427 aa	Known RBP	13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RPS27	P42677	84 aa	Known RBP	13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	EVX1	P49640	407 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	ERVK-25	P63136	954 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	CD226	Q15762	336 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	HDDC2	Q7Z4H3	204 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	OR4D9	Q8NGE8	314 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	SORCS2	Q96PQ0	1159 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	ASB6	Q9NWX5	421 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	EXTL2	Q9UBQ6	330 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286		H7C1C5	153 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	RGS9	O75916	674 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	CSTA	P01040	98 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	LCN6	P62502	163 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	EXOSC2	Q13868	293 aa	Known RBP	13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	BCL2L15	Q5TBC7	163 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	BICRAL	Q6AI39	1079 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	GID4	Q8IVV7	300 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	GPALPP1	Q8IXQ4	340 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	BCORP1	Q8N888	145 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	SAMD12	Q8N8I0	201 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	OR6K6	Q8NGW6	343 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	PDCD1LG2	Q9BQ51	273 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	MESP1	Q9BRJ9	268 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	PPA2	Q9H2U2	334 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	ERVMER34-1	Q9H9K5	563 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	PNO1	Q9NRX1	252 aa	Known RBP	13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	DHCR7	Q9UBM7	475 aa	Known RBP	13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	SLC35A3	Q9Y2D2	325 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	PCP4L1	A6NKN8	68 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	SRP9	P49458	86 aa	Known RBP	13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	RIN1	Q13671	783 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	ZNHIT3	Q15649	155 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	COL28A1	Q2UY09	1125 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	CLLU1	Q5K131	121 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	APOOL	Q6UXV4	268 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	ZBTB44	Q8NCP5	570 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	MOSPD2	Q8NHP6	518 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	GHSR	Q92847	366 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	TSLP	Q969D9	159 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	DGAT2	Q96PD7	388 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	RTN4R	Q9BZR6	473 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	COPS3	Q9UNS2	423 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	MED12	Q93074	2177 aa		13.53	□□□□□ -0.24
DDX55-209	ENST00000542286	ASCC3	Q8N3C0	2202 aa	Known RBP	13.52	□□□□□ -0.24
DDX55-209	ENST00000542286		A0A1W2PPC4	97 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	ANKRD61	A6NGH8	418 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	BLOC1S5-TXNDC5	H3BN57	136 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	RNH1	P13489	461 aa	Known RBP	13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	SLC2A5	P22732	501 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	METAP1D	Q6UB28	335 aa	Predicted RBP	13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	GPAT4	Q86UL3	456 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	RNF113B	Q8IZP6	322 aa	Known RBP	13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	OR11H7	Q8NGC8	314 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	OR10A5	Q9H207	317 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	ZNF576	Q9H609	170 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	ISYNA1	Q9NPH2	558 aa		13.52	□□□□□ -0.24
DDX55-209	ENST00000542286	IFNA7	P01567	189 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	RRAS	P10301	218 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF3	P17036	446 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	HK1	P19367	917 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	SSTR2	P30874	369 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	EFNA3	P52797	238 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	BTN1A1	Q13410	526 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	PRTG	Q2VWP7	1150 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF613	Q6PF04	617 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	IZUMO1	Q8IYV9	350 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	C10orf53	Q8N6V4	93 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	OR51Q1	Q8NH59	317 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	ABHD4	Q8TB40	342 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	FOXN4	Q96NZ1	517 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	SLC38A3	Q99624	504 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	HDHD2	Q9H0R4	259 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	TRIM36	Q9NQ86	728 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	RPS6KB2	Q9UBS0	482 aa		13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	MRPS7	Q9Y2R9	242 aa	Known RBP	13.52	□□□□□ -0.25
DDX55-209	ENST00000542286	OR6C68	A6NDL8	312 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	PRR32	B1ATL7	298 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	TOR1A	O14656	332 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	GPANK1	O95872	356 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	COL4A2	P08572	1712 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	PEPD	P12955	493 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	GPR3	P46089	330 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	BTG1	P62324	171 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	GPR176	Q14439	515 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	TMEM81	Q6P7N7	255 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	SHISA6	Q6ZSJ9	500 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	TTLL10	Q6ZVT0	673 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	TRIL	Q7L0X0	811 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	GCDH	Q92947	438 aa	Predicted RBP	13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	PGLYRP3	Q96LB9	341 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	ELF4	Q99607	663 aa	Predicted RBP	13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	NDC1	Q9BTX1	674 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	OR8D2	Q9GZM6	311 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	CLEC4M	Q9H2X3	399 aa	Predicted RBP	13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	C8orf33	Q9H7E9	229 aa	Predicted RBP	13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	ENAM	Q9NRM1	1142 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	SLC22A31	A6NKX4	558 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	F13B	P05160	661 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms