RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SLC7A10Q9NS82 523 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 SLC9A8Q9Y2E8 581 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 GMNCA6NCL1 334 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 LRRN3E7EW58 273 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 ITGA5P08648 1049 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 FAPQ12884 760 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 VEZF1Q14119 521 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 FAM69AQ5T7M9 428 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 TMEM225Q6GV28 225 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 C8orf82Q6P1X6 216 aaPredicted RBP13.29□□□□□ -0.28
UBE3B-212ENST00000540230 EPHX4Q8IUS5 362 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 SLC26A7Q8TE54 656 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 TMEM45BQ96B21 275 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 PLPPR2Q96GM1 343 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 SF3B5Q9BWJ5 86 aaKnown RBP13.29□□□□□ -0.28
UBE3B-212ENST00000540230 B3GAT1Q9P2W7 334 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 MALT1Q9UDY8 824 aa13.29□□□□□ -0.28
UBE3B-212ENST00000540230 PRRC2AP48634 2157 aaKnown RBP13.28□□□□□ -0.28
UBE3B-212ENST00000540230 TRAV36DV7A0A075B6V5 113 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 M0R082 166 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 PDLIM1O00151 329 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 NME4O00746 187 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 FMO6PO60774 539 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 SHOX2O60902 331 aaPredicted RBP13.28□□□□□ -0.28
UBE3B-212ENST00000540230 RAD51DO75771 328 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ATE1O95260 518 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 CNOT4O95628 575 aaKnown RBP13.28□□□□□ -0.28
UBE3B-212ENST00000540230 GRPRP30550 384 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ART1P52961 327 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 LGALS3BPQ08380 585 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 STK11Q15831 433 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 BEX5Q5H9J7 111 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 C9orf135Q5VTT2 229 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ERICH5Q6P6B1 374 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ZNF613Q6PF04 617 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 CREB3L2Q70SY1 520 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 OR2T12Q8NG77 320 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ZNF417Q8TAU3 575 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ADAMTS16Q8TE57 1224 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 NINJ1Q92982 152 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 MOGAT1Q96PD6 335 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ZNF587Q96SQ5 575 aaPredicted RBP13.28□□□□□ -0.28
UBE3B-212ENST00000540230 EVA1AQ9H8M9 152 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 ASB6Q9NWX5 421 aa13.28□□□□□ -0.28
UBE3B-212ENST00000540230 BGLAPP02818 100 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 RAF1P04049 648 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 CD53P19397 219 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 SELENOPP49908 381 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 NUDT2P50583 147 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 SLC7A2P52569 658 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 LRRC23Q53EV4 343 aaPredicted RBP13.27□□□□□ -0.29
UBE3B-212ENST00000540230 LINC00114Q6XXX2 140 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 AAED1Q7RTV5 226 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 CPLX4Q7Z7G2 160 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 CARM1Q86X55 608 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 MICU2Q8IYU8 434 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 NSRP1Q9H0G5 558 aaKnown RBP13.27□□□□□ -0.29
UBE3B-212ENST00000540230 PCDHAC1Q9H158 963 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 UBTD1Q9HAC8 227 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 NPAP1Q9NZP6 1156 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 SELENONQ9NZV5 590 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 RASD1Q9Y272 281 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 SH3GLB1Q9Y371 365 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 CADP27708 2225 aa13.27□□□□□ -0.29
UBE3B-212ENST00000540230 F8P00451 2351 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 A0A1W2PR80 420 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 ELOVL7A1L3X0 281 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 CHP2O43745 196 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 GGT1P19440 569 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 DNASE1P24855 282 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 GTF2E2P29084 291 aaKnown RBP13.26□□□□□ -0.29
UBE3B-212ENST00000540230 KDELR2P33947 212 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 OR1E2P47887 323 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 LIPEQ05469 1076 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 KEAP1Q14145 624 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 SWT1Q5T5J6 900 aaKnown RBP13.26□□□□□ -0.29
UBE3B-212ENST00000540230 C5orf46Q6UWT4 87 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 HSD17B8Q92506 261 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 PRSS27Q9BQR3 290 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 TAS2R16Q9NYV7 291 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 SLC7A7Q9UM01 511 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 HIVEP1P15822 2718 aa13.26□□□□□ -0.29
UBE3B-212ENST00000540230 CIB4A0PJX0 185 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 OR5H1A6NKK0 313 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 DYNC1I1O14576 645 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 OR2T1O43869 369 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 VAMP5O95183 116 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 HPRP00739 348 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 HLA-DOBP13765 273 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 GABRA6Q16445 453 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 CYBRD1Q53TN4 286 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 NIPAL3Q6P499 406 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 ZNF704Q6ZNC4 412 aaPredicted RBP13.25□□□□□ -0.29
UBE3B-212ENST00000540230 LINGO2Q7L985 606 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 ARPINQ7Z6K5 226 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 RASSF5Q8WWW0 418 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 PROX1Q92786 737 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 SLC41A3Q96GZ6 507 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 TMEM204Q9BSN7 226 aa13.25□□□□□ -0.29
UBE3B-212ENST00000540230 TMEM43Q9BTV4 400 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms