RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 HES5Q5TA89 166 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 TMEM65Q6PI78 240 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 DPY19L2P2Q6ZN68 376 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 FGD2Q7Z6J4 655 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 RCBTB1Q8NDN9 531 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 GCDHQ92947 438 aaPredicted RBP17.63■□□□□ 0.41
VPS28-213ENST00000530983 HSPA12BQ96MM6 686 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 CMTM3Q96MX0 182 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 NMNAT2Q9BZQ4 307 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 SLC25A18Q9H1K4 315 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 C20orf85Q9H1P6 137 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 BEX1Q9HBH7 125 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 WSB2Q9NYS7 404 aaPredicted RBP17.63■□□□□ 0.41
VPS28-213ENST00000530983 SCML1Q9UN30 329 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 TP53BP1Q12888 1972 aaPredicted RBP17.63■□□□□ 0.41
VPS28-213ENST00000530983 MPDZO75970 2070 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 SPTBN5Q9NRC6 3674 aaKnown RBP17.63■□□□□ 0.41
VPS28-213ENST00000530983 A0A087WUJ7 227 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 ANKRD61A6NGH8 418 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 ACOD1A6NK06 481 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 PRR32B1ATL7 298 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 ZNF749O43361 778 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 GMDSO60547 372 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 EGFP01133 1207 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 MAGEB1P43366 347 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 GPR143P51810 404 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 ZP1P60852 638 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 LGALS3BPQ08380 585 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 RIPPLY1Q0D2K3 151 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 DEFB110Q30KQ9 67 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 TMEM255AQ5JRV8 349 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 C7orf61Q8IZ16 206 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 OR6K6Q8NGW6 343 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 RPS4Y2Q8TD47 263 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 PCNPQ8WW12 178 aaKnown RBP17.63■□□□□ 0.41
VPS28-213ENST00000530983 RASD2Q96D21 266 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 SLC25A38Q96DW6 304 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 SPACA7Q96KW9 195 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 CCDC3Q9BQI4 270 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 ACTR6Q9GZN1 396 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 FAM60AQ9NP50 221 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 DLL4Q9NR61 685 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 MRPL15Q9P015 296 aaKnown RBP17.63■□□□□ 0.41
VPS28-213ENST00000530983 PSMD9O00233 223 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 GPRIN2O60269 458 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 HPXP02790 462 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 PTGS2P35354 604 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 NANOS3P60323 173 aaKnown RBP17.62■□□□□ 0.41
VPS28-213ENST00000530983 ILF3Q12906 894 aaKnown RBP eCLIP17.62■□□□□ 0.41
VPS28-213ENST00000530983 NNATQ16517 81 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 LINGO2Q7L985 606 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 ZNF527Q8NB42 609 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 ZNF784Q8NCA9 323 aaPredicted RBP17.62■□□□□ 0.41
VPS28-213ENST00000530983 OR11G2Q8NGC1 345 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 RNF166Q96A37 237 aaPredicted RBP17.62■□□□□ 0.41
VPS28-213ENST00000530983 DACT3Q96B18 629 aaPredicted RBP17.62■□□□□ 0.41
VPS28-213ENST00000530983 LMAN2LQ9H0V9 348 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 ZNF275Q9NSD4 429 aaPredicted RBP17.62■□□□□ 0.41
VPS28-213ENST00000530983 RCE1Q9Y256 329 aa17.62■□□□□ 0.41
VPS28-213ENST00000530983 A0A1B0GVI7 797 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 RPS10-NUDT3A0A1W2PQS6 291 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 IFITM5A6NNB3 132 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 AIPO00170 330 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 ARPC3O15145 178 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 LINC01565O15544 149 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 GRPRP30550 384 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 UBE2IP63279 158 aaKnown RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 SLC35D3Q5M8T2 416 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 ZNF761Q86XN6 746 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 ARHGEF39Q8N4T4 335 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 OR6C4Q8NGE1 309 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 RGP1Q92546 391 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 PHYHIPQ92561 330 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 RIT1Q92963 219 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 MSANTD3Q96H12 275 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 MRGPRX1Q96LB2 322 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 SORCS2Q96PQ0 1159 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 CDCA3Q99618 268 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 A0A087WV48 116 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 SSNA1O43805 119 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 DPP4P27487 766 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 RPS4XP62701 263 aaKnown RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 ERVK-25P63136 954 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 ZNF267Q14586 743 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 LGALSLQ3ZCW2 172 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 SFRP4Q6FHJ7 346 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 COMMD7Q86VX2 200 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 PIAS4Q8N2W9 510 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 TCEAL2Q9H3H9 227 aaPredicted RBP17.61■□□□□ 0.41
VPS28-213ENST00000530983 PLEKHA1Q9HB21 404 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 NKIRAS2Q9NYR9 191 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 LRIT1Q9P2V4 623 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 FLVCR2Q9UPI3 526 aa17.61■□□□□ 0.41
VPS28-213ENST00000530983 FAM221BA6H8Z2 402 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 C4orf47A7E2U8 309 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 TRIM77I1YAP6 450 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 PEX14O75381 377 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 ZFPL1O95159 310 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 NAGAP17050 411 aa17.6■□□□□ 0.41
VPS28-213ENST00000530983 CCR9P51686 369 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms