RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 DUS3LQ96G46 650 aaKnown RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 SNF8Q96H20 258 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 CPB2Q96IY4 423 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 CXorf58Q96LI9 332 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ZNF578Q96N58 590 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 RIT2Q99578 217 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 CTRCQ99895 268 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TTYH2Q9BSA4 534 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 MED10Q9BTT4 135 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DPH7Q9BTV6 452 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DGCR6LQ9BY27 220 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PITPNM3Q9BZ71 974 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DRC3Q9H069 523 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ILKAPQ9H0C8 392 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 SLC38A10Q9HBR0 1119 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ZNF334Q9HCZ1 680 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 SIX2Q9NPC8 291 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 INTS9Q9NV88 658 aaKnown RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 IFNKQ9P0W0 207 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 MIOXQ9UGB7 285 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 APOBEC3BQ9UH17 382 aaKnown RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 IKZF2Q9UKS7 526 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 LRRC42Q9Y546 428 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 KPTNQ9Y664 436 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 GRIN2DO15399 1336 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DOCK7Q96N67 2140 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TNRC18O15417 2968 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 DNAH12Q6ZR08 3092 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ATAD5Q96QE3 1844 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 PTPRFP10586 1907 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 BAZ2AQ9UIF9 1905 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 CASP8AP2Q9UKL3 1982 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 A0A0A6YYH2 397 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 A0A1B0GW15 77 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 SH3PXD2BA1X283 911 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 A6NJ64 397 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 GOLGA8JA6NMD2 632 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 RNASEK-C17orf49H0YIS7 233 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 H3BTX0 84 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 RAB29O14966 203 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 CYTH3O43739 400 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 NADKO95544 446 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 PAK4O96013 591 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 CST4P01036 141 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 GPIP06744 558 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 OCMP0CE72 109 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 TRIM49P0CI25 452 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 TRIM49CP0CI26 452 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 TSPAN8P19075 237 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 LHCGRP22888 699 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 GTF2E2P29084 291 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 HMOX2P30519 316 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 HMGCLP35914 325 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 NPBWR2P48146 333 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 CSNK1DP48730 415 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 NPY2RP49146 381 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 GTF2A1P52655 376 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 ACLYP53396 1101 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 HMGCS2P54868 508 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 OR2B6P58173 313 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 RPL36AP83881 106 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 GLO1Q04760 184 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 RAD51Q06609 339 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 ALX1Q15699 326 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 KNOP1Q1ED39 458 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 KIAA1644Q3SXP7 199 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 GLYR1Q49A26 553 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 COQ5Q5HYK3 327 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 OTUD3Q5T2D3 398 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 LYPLAL1Q5VWZ2 237 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 TIGD3Q6B0B8 471 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 OR52W1Q6IF63 320 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 FAM151BQ6UXP7 276 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 LRRC74BQ6ZQY2 392 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 TMEM179Q6ZVK1 233 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 TRMT1LQ7Z2T5 733 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 PID1Q7Z2X4 250 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 FAM122BQ7Z309 247 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 ZNF589Q86UQ0 364 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 RNF130Q86XS8 419 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 MMAAQ8IVH4 418 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 CMTM8Q8IZV2 173 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 PARP8Q8N3A8 854 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 KLHDC1Q8N7A1 406 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 MFSD9Q8NBP5 474 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 ZNF248Q8NDW4 579 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 NFAM1Q8NET5 270 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 OR6M1Q8NGM8 313 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 WDR36Q8NI36 951 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 ACER1Q8TDN7 264 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 OTUB2Q96DC9 234 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 C12orf42Q96LP6 360 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 P2RY13Q9BPV8 354 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 SLC30A2Q9BRI3 323 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 C7orf50Q9BRJ6 194 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 RAB11FIP5Q9BXF6 653 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 DUSP16Q9BY84 665 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 FAM49AQ9H0Q0 323 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 LRRN3Q9H3W5 708 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 C5orf66Q9H5L9 145 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms