RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MUC21Q5SSG8 566 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 RESP18Q5W5W9 173 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 TMEM270Q6UE05 265 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 FRA10AC1Q70Z53 315 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CYS1Q717R9 158 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 KRTAP11-1Q8IUC1 163 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 MISPQ8IVT2 679 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 MICU2Q8IYU8 434 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 GPR137CQ8N3F9 429 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 RIBC1Q8N443 379 aaPredicted RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 Q8N9G6 341 aaPredicted RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 SYT14Q8NB59 555 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR5T1Q8NG75 326 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR52E1Q8NGJ3 308 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR5D18Q8NGL1 313 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR1B1Q8NGR6 318 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR2T3Q8NH03 318 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR6X1Q8NH79 312 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 ZNF596Q8TC21 504 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 MRAPQ8TCY5 172 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CA5BP1Q8WTZ4 195 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 PYDC1Q8WXC3 89 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CACNG8Q8WXS5 425 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 SLC35C1Q96A29 364 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 TESCQ96BS2 214 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 DGCR14Q96DF8 476 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 SPATA13Q96N96 652 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 FOPNLQ96NB1 174 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 RCHY1Q96PM5 261 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 TGS1Q96RS0 853 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 ZBTB18Q99592 522 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 HSD17B14Q9BPX1 270 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 ZNF251Q9BRH9 671 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 C2orf88Q9BSF0 95 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 COPS4Q9BT78 406 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 RBM24Q9BX46 236 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 ZYG11BQ9C0D3 744 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 HDHD2Q9H0R4 259 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 METTL9Q9H1A3 318 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 SPNS1Q9H2V7 528 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OR51M1Q9H341 326 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 LIME1Q9H400 295 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 PIGUQ9H490 435 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 FBXO44Q9H4M3 255 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 METTL8Q9H825 291 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 COG4Q9H9E3 785 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 TREX1Q9NSU2 369 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 RBAKQ9NYW8 714 aaPredicted RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 CNIH4Q9P003 139 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 THYN1Q9P016 225 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 ANKMY1Q9P2S6 941 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 UVRAGQ9P2Y5 699 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 EIF3KQ9UBQ5 218 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 PEF1Q9UBV8 284 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 BTNL2Q9UIR0 455 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 DNPEPQ9ULA0 475 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 NIP7Q9Y221 180 aaKnown RBP eCLIP2.97□□□□□ -1.93
CD44-217ENST00000525348 MRPS18BQ9Y676 258 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 POMT1Q9Y6A1 747 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 AP4B1Q9Y6B7 739 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CHD2O14647 1828 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 ASXL1Q8IXJ9 1541 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 POLR3AO14802 1390 aaPredicted RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 PNPLA6Q8IY17 1366 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 RGPD1P0DJD0 1748 aa2.96□□□□□ -1.93
CD44-217ENST00000525348 UBE4BO95155 1302 aa2.96□□□□□ -1.93
CD44-217ENST00000525348 MAP3K15Q6ZN16 1313 aa2.96□□□□□ -1.93
CD44-217ENST00000525348 GLI3P10071 1580 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 TROQ12816 1431 aaPredicted RBP2.96□□□□□ -1.94
CD44-217ENST00000525348 A0A075B6Q4 140 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 TRAV34A0A0B4J273 112 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 A0A0X1KG70 313 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 C2orf92A0A1B0GVN3 265 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 GNG14A0A1W2PPG7 69 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 C9orf170A2RU37 121 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 VPS37CA5D8V6 355 aaPredicted RBP2.96□□□□□ -1.94
CD44-217ENST00000525348 TRIM49BA6NDI0 452 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 IGLON5A6NGN9 336 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 OR2AG2A6NM03 316 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 WASHC1A8K0Z3 465 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 ZNF487B1APH4 448 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 TCP10L2B9ZVM9 353 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 WASH3PC4AMC7 463 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 E9PAM4 449 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 LGALS8O00214 317 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 ZNF263O14978 683 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 P2RX6O15547 441 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 LRRTM2O43300 516 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 POP7O75817 140 aaKnown RBP2.96□□□□□ -1.94
CD44-217ENST00000525348 GATBO75879 557 aaKnown RBP2.96□□□□□ -1.94
CD44-217ENST00000525348 AHSA1O95433 338 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 FAM107AO95990 144 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 AK1P00568 194 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 SERPINA3P01011 423 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 APOA1P02647 267 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 LYNP07948 512 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 GUSBP08236 651 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 ANXA5P08758 320 aa2.96□□□□□ -1.94
CD44-217ENST00000525348 UBTFL1P0CB47 393 aaPredicted RBP2.96□□□□□ -1.94
CD44-217ENST00000525348 NR2C1P13056 603 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms