RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 REP15Q6BDI9 236 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 HIST2H2BDQ6DRA6 164 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 CREB3L2Q70SY1 520 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 C16orf62Q7Z3J2 963 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 ARFGAP2Q8N6H7 521 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 NATD1Q8N6N6 113 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 ANKK1Q8NFD2 765 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 IL17RDQ8NFM7 739 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 RNF217Q8TC41 542 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 ACMSDQ8TDX5 336 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 ZNF416Q9BWM5 594 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 LINC00470Q9BZP3 86 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 ZNF665Q9H7R5 613 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 ATAD3AQ9NVI7 634 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 MED29Q9NX70 200 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 CORINQ9Y5Q5 1042 aa9.39□□□□□ -0.91
DDX41-216ENST00000513562 A0A087WUV0 522 aaPredicted RBP9.38□□□□□ -0.91
DDX41-216ENST00000513562 EXOC1LA0A1B0GW35 172 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 CLDN24A6NM45 220 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 POM121CA8CG34 1229 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 TMEM114B3SHH9 223 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 RPL36A-HNRNPH2H7BZ11 118 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 AZIN1O14977 448 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 PLPP2O43688 288 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 DEAF1O75398 565 aaPredicted RBP9.38□□□□□ -0.91
DDX41-216ENST00000513562 LINC00032P0C843 101 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 PRTN3P24158 256 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 FPR2P25090 351 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 SOAT1P35610 550 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 ALDH3B1P43353 468 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 KCNJ10P78508 379 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 ROR2Q01974 943 aaKnown RBP9.38□□□□□ -0.91
DDX41-216ENST00000513562 FUT5Q11128 374 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 ZP4Q12836 540 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 NPRL3Q12980 569 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 PTGR1Q14914 329 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 OR7A5Q15622 319 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 KANK2Q63ZY3 851 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 FRRS1Q6ZNA5 592 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 C6orf120Q7Z4R8 191 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 MIPOL1Q8TD10 442 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 C22orf15Q8WYQ4 148 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 DVL3Q92997 716 aaPredicted RBP9.38□□□□□ -0.91
DDX41-216ENST00000513562 LRRC58Q96CX6 371 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 COQ8BQ96D53 544 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 ZG16BQ96DA0 208 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 TSPYL1Q9H0U9 437 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 SLITRK2Q9H156 845 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 ZMAT3Q9HA38 289 aaKnown RBP9.38□□□□□ -0.91
DDX41-216ENST00000513562 CRLF2Q9HC73 371 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 POLE3Q9NRF9 147 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 EXD2Q9NVH0 621 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 OXSMQ9NWU1 459 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 OPN4Q9UHM6 478 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 WDR45Q9Y484 360 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 DNAJC15Q9Y5T4 150 aa9.38□□□□□ -0.91
DDX41-216ENST00000513562 FAAHO00519 579 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 CFLARO15519 480 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 LYPLA1O75608 230 aaPredicted RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 VAMP5O95183 116 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 MAPK1P28482 360 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 SEC24CP53992 1094 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 IL13RA1P78552 427 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 ARF1P84077 181 aaKnown RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 MAD2L1BPQ15013 274 aaPredicted RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 DCAF12L2Q5VW00 463 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 TMEM225Q6GV28 225 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 C8orf74Q6P047 294 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 NIPAL3Q6P499 406 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 RBMS3Q6XE24 437 aaKnown RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 DOK3Q7L591 496 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 ZNF572Q7Z3I7 529 aaPredicted RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 MDP1Q86V88 176 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 EPHX4Q8IUS5 362 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 SIGLECL1Q8N7X8 197 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 CNOT9Q92600 299 aaKnown RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 RAB39BQ96DA2 213 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 SLC35G5Q96KT7 338 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 SYT3Q9BQG1 590 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 C1QTNF5Q9BXJ0 243 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 OR51I1Q9H343 314 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 ZNF385DQ9H6B1 395 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 DCDC2Q9UHG0 476 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 FIS1Q9Y3D6 152 aa9.37□□□□□ -0.91
DDX41-216ENST00000513562 KMT2CQ8NEZ4 4911 aaKnown RBP9.37□□□□□ -0.91
DDX41-216ENST00000513562 RNF103-CHMP3A0A140T963 221 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 DNAJC9-AS1A6NH13 148 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 ZNF432O94892 652 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 AGR2O95994 175 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 CHEK2O96017 543 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 PROCP04070 461 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 NUDT17P0C025 328 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 ZNF35P13682 527 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 GATA3P23771 443 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 GLRXP35754 106 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 ATAD3BQ5T9A4 648 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 HMGN2P46Q86SG4 172 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 LRP11Q86VZ4 500 aa9.36□□□□□ -0.91
DDX41-216ENST00000513562 RIMKLAQ8IXN7 391 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms