RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ZNF776Q68DI1 518 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 SLC46A3Q7Z3Q1 461 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TRMT11Q7Z4G4 463 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 PIGZQ86VD9 579 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 THOC6Q86W42 341 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 ETFBKMTQ8IXQ9 262 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 SP8Q8IXZ3 490 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CMTM4Q8IZR5 234 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CADM3Q8N126 398 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CHST13Q8NET6 341 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OR8G5Q8NG78 346 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OR52R1Q8NGF1 315 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 IL22RA2Q969J5 263 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 FBXL18Q96ME1 805 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 ZNF382Q96SR6 550 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TMEM204Q9BSN7 226 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 DERL2Q9GZP9 239 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 C20orf85Q9H1P6 137 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OR52D1Q9H346 318 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 MFSD1Q9H3U5 465 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 KCNK15Q9H427 330 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 AGPAT4Q9NRZ5 378 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 FKBP11Q9NYL4 201 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 IL37Q9NZH6 218 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 ABI3Q9P2A4 366 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 V9GY05 133 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CASP8AP2Q9UKL3 1982 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TRAV36DV7A0A075B6V5 113 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 ZNF850A8MQ14 1090 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 I6L893 689 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 SLC16A6O15403 523 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CNMDO75829 334 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 FUCA1P04066 466 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 JUNP05412 331 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 SOD3P08294 240 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 ATXN1LP0C7T5 689 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 TMIGD3P0DMS9 266 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 HIST1H1BP16401 226 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 RHOQP17081 205 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CELP19835 753 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CR2P20023 1033 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 ACKR3P25106 362 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 IDUAP35475 653 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OR3A1P47881 315 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 PREPP48147 710 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 MARCKSL1P49006 195 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 PPOXP50336 477 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 NDST2P52849 883 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 PGGT1BP53609 377 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OC90Q02509 493 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 BAXQ07812 192 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 SRSF5Q13243 272 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 GPR17Q13304 367 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CRHR2Q13324 411 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 EXOSC2Q13868 293 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 ERV3-1Q14264 604 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 EBPQ15125 230 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 MICAQ29983 383 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 LRRC37A5PQ49AS3 106 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 HGSNATQ68CP4 663 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 MBLAC2Q68D91 279 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 FAM117BQ6P1L5 589 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 FAHD2BQ6P2I3 314 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 TFAP2EQ6VUC0 442 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 MAMSTRQ6ZN01 415 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 C6orf201Q7Z4U5 140 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 LHFPL4Q7Z7J7 247 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TMPRSS12Q86WS5 348 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 C17orf78Q8N4C9 275 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 CHST14Q8NCH0 376 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OR51A4Q8NGJ6 313 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 OR5M3Q8NGP4 307 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 SPATA20Q8TB22 786 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 IGDCC4Q8TDY8 1250 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 UTP4Q969X6 686 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 FAHD2AQ96GK7 314 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 PACRGQ96M98 296 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 GPA33Q99795 319 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 PIMREGQ9BSJ6 248 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 G6PC3Q9BUM1 346 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 SGPP1Q9BX95 441 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 MIXL1Q9H2W2 232 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 RDH14Q9HBH5 336 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TM7SF3Q9NS93 570 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 GJB4Q9NTQ9 266 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 METTL1Q9UBP6 276 aaKnown RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 ZNF107Q9UII5 783 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 ADAMTS6Q9UKP5 1117 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TNFSF13BQ9Y275 285 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 STARD10Q9Y365 291 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TMEM184BQ9Y519 407 aaPredicted RBP3.34□□□□□ -1.87
USP53-205ENST00000509769 CLDN16Q9Y5I7 305 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 DUSP10Q9Y6W6 482 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TOGARAM1Q9Y4F4 1720 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 SALL3Q9BXA9 1300 aa3.34□□□□□ -1.87
USP53-205ENST00000509769 TRBV9A0A0B4J1U6 114 aa3.34□□□□□ -1.88
USP53-205ENST00000509769 FAM221AA4D161 298 aa3.34□□□□□ -1.88
USP53-205ENST00000509769 BLACEA4D250 179 aa3.34□□□□□ -1.88
USP53-205ENST00000509769 MAP1LC3B2A6NCE7 125 aa3.34□□□□□ -1.88
USP53-205ENST00000509769 OR5H15A6NDH6 313 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms