RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 C3orf49Q96BT1 292 aa13.46□□□□□ -0.25
TPM3-219ENST00000509409 FBXO17Q96EF6 278 aa13.46□□□□□ -0.25
TPM3-219ENST00000509409 RASD1Q9Y272 281 aa13.46□□□□□ -0.25
TPM3-219ENST00000509409 PCDHB14Q9Y5E9 798 aa13.46□□□□□ -0.25
TPM3-219ENST00000509409 A0A096LPI6 279 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 ATP6V1G2-DDX39BF2Z307 99 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 CLIC1O00299 241 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 FRS3O43559 492 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 ERLIN1O75477 346 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 LGI1O95970 557 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 NUDT7P0C024 238 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 SELENOPP49908 381 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 STX1BP61266 288 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 LGALS3BPQ08380 585 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 RGNQ15493 299 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 C1QTNF12Q5T7M4 302 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 SLC2A7Q6PXP3 512 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 CXXC5Q7LFL8 322 aaKnown RBP13.45□□□□□ -0.26
TPM3-219ENST00000509409 KDM8Q8N371 416 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 ZNF525Q8N782 197 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 FAM168AQ92567 244 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 GTF2H4Q92759 462 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 MAL2Q969L2 176 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 TNFRSF13CQ96RJ3 184 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 TMBIM4Q9HC24 238 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 USH1CQ9Y6N9 552 aa13.45□□□□□ -0.26
TPM3-219ENST00000509409 OR6C65A6NJZ3 312 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 ELOA3DA6NLF2 546 aaPredicted RBP13.44□□□□□ -0.26
TPM3-219ENST00000509409 H7C417 338 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 SLC25A16P16260 332 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 ZNF43P17038 809 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 RPS5P46782 204 aaKnown RBP13.44□□□□□ -0.26
TPM3-219ENST00000509409 P2RY4P51582 365 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 EFNA4P52798 201 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 IL1RL1Q01638 556 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 ELOA3BQ3SY89 546 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 TBRG1Q3YBR2 411 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 PODNL1Q6PEZ8 512 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 HIPK1Q86Z02 1210 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 GOLGA6L1Q8N7Z2 621 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 ELOA3Q8NG57 546 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 OR1K1Q8NGR3 316 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 MFSD8Q8NHS3 518 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 BBS10Q8TAM1 723 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 SLC38A2Q96QD8 506 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 PAIP1Q9H074 479 aaKnown RBP13.44□□□□□ -0.26
TPM3-219ENST00000509409 A4GALTQ9NPC4 353 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 OBP2BQ9NPH6 170 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 CHST2Q9Y4C5 530 aa13.44□□□□□ -0.26
TPM3-219ENST00000509409 A0A096LPE4 126 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 IGHV1-18A0A0C4DH31 117 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 A0A1W2PPZ6 126 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 NR5A2O00482 541 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 NPIPB7O75200 414 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 UPK3AO75631 287 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 PAX7P23759 505 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 CLDN17P56750 224 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 LOXL1Q08397 574 aaPredicted RBP13.43□□□□□ -0.26
TPM3-219ENST00000509409 FADDQ13158 208 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 C1DQ13901 141 aaKnown RBP13.43□□□□□ -0.26
TPM3-219ENST00000509409 TMEM249Q2WGJ8 235 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 CHRFAM7AQ494W8 412 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 EPGNQ6UW88 154 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 EPHX4Q8IUS5 362 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 RNF217Q8TC41 542 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 BCL2L2Q92843 193 aaPredicted RBP13.43□□□□□ -0.26
TPM3-219ENST00000509409 TLCD1Q96CP7 247 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 MS4A3Q96HJ5 214 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 ALKBH3Q96Q83 286 aaPredicted RBP13.43□□□□□ -0.26
TPM3-219ENST00000509409 KCNK17Q96T54 332 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 BCL2L10Q9HD36 194 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 ABCA1O95477 2261 aa13.43□□□□□ -0.26
TPM3-219ENST00000509409 SONP18583 2426 aaKnown RBP13.42□□□□□ -0.26
TPM3-219ENST00000509409 TMEM229AB2RXF0 380 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 POLR3GO15318 223 aaPredicted RBP13.42□□□□□ -0.26
TPM3-219ENST00000509409 LY6HO94772 140 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 F12P00748 615 aaPredicted RBP13.42□□□□□ -0.26
TPM3-219ENST00000509409 CRYAAP02489 173 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 CSF3P09919 207 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 PNMTP11086 282 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 TUBA1BP68363 451 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 TUBA4AP68366 448 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 ROR2Q01974 943 aaKnown RBP13.42□□□□□ -0.26
TPM3-219ENST00000509409 CARTPTQ16568 116 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 CYB5R2Q6BCY4 276 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 ANKRD16Q6P6B7 361 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 VHLLQ6RSH7 139 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 TUBA1AQ71U36 451 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 SPATA3Q8NHX4 192 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 NFKBIDQ8NI38 313 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 PROX1Q92786 737 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 KTI12Q96EK9 354 aaPredicted RBP13.42□□□□□ -0.26
TPM3-219ENST00000509409 VRK1Q99986 396 aaPredicted RBP13.42□□□□□ -0.26
TPM3-219ENST00000509409 SELENONQ9NZV5 590 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 FKBP7Q9Y680 259 aa13.42□□□□□ -0.26
TPM3-219ENST00000509409 RNF212BA8MTL3 300 aa13.41□□□□□ -0.26
TPM3-219ENST00000509409 AIM2O14862 343 aa13.41□□□□□ -0.26
TPM3-219ENST00000509409 OR2T1O43869 369 aa13.41□□□□□ -0.26
TPM3-219ENST00000509409 SLC43A1O75387 559 aa13.41□□□□□ -0.26
TPM3-219ENST00000509409 USF1P22415 310 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms