RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 AK6Q9Y3D8 172 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ADAM18Q9Y3Q7 739 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR10H2O60403 315 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CD1AP06126 327 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DRD1P21728 446 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 STOMP27105 288 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CBX5P45973 191 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DIO1P49895 249 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ACTA2P62736 377 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ACTG2P63267 376 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF141Q15928 474 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NDUFAF6Q330K2 333 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RPL22L1Q6P5R6 122 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NPSR1Q6W5P4 371 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OVCH1Q7RTY7 1134 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF687Q8N1G0 1237 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NPEPL1Q8NDH3 523 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR10Z1Q8NGY1 313 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZPLD1Q8TCW7 415 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RLN3Q8WXF3 142 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 VSTM2LQ96N03 204 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CITED4Q96RK1 184 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GFI1Q99684 422 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PDCD1LG2Q9BQ51 273 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RBCK1Q9BYM8 510 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR51J1Q9H342 316 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NCDNQ9UBB6 729 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 WNT16Q9UBV4 365 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SPATA2Q9UM82 520 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MRPS7Q9Y2R9 242 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PCDHGA9Q9Y5G4 932 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TCRBV21S2A2A0A5A6 115 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GSTZ1O43708 216 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ARL6IP5O75915 188 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HOXB1P14653 301 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CXCL3P19876 107 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CCR6P51684 374 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZXDAP98168 799 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PITPNAQ00169 270 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 KLF9Q13886 244 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CD276Q5ZPR3 534 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PRSS45Q7RTY3 260 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SLITRK4Q8IW52 837 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FAM160A2Q8N612 972 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RCBTB1Q8NDN9 531 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PHF21AQ96BD5 680 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SGTBQ96EQ0 304 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MS4A3Q96HJ5 214 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GPR137Q96N19 417 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR2M2Q96R28 347 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CACNG6Q9BXT2 260 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 POT1Q9NUX5 634 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TRBV2A0A0J9YWF9 115 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FAM221BA6H8Z2 402 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PIN1P1O15428 100 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SELENOFO60613 162 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GATBO75879 557 aaKnown RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CELA2BP08218 269 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ADRB1P08588 477 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SDHBP21912 280 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PSMB10P40306 273 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ILF3Q12906 894 aaKnown RBP eCLIP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DEFB110Q30KQ9 67 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PXDC1Q5TGL8 231 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MTFR2Q6P444 385 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 KIAA1324Q6UXG2 1013 aaKnown RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 Q6ZSR6 202 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF761Q86XN6 746 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR11H4Q8NGC9 324 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GPBAR1Q8TDU6 330 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ADAMTS14Q8WXS8 1223 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SPACA7Q96KW9 195 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NMNAT2Q9BZQ4 307 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NRIP3Q9NQ35 241 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MRPL39Q9NYK5 338 aaKnown RBP14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GNG8Q9UK08 70 aa14.72□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ARPC4-TTLL3A0A0A6YYG9 625 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR6C68A6NDL8 312 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CTDSPLO15194 276 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 WNT1P04628 370 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SYPP08247 313 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 EDNRAP25101 427 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GSG1Q2KHT4 349 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GXYLT1Q4G148 440 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MAMSTRQ6ZN01 415 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF550Q7Z398 422 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CMIPQ8IY22 773 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 IZUMO1Q8IYV9 350 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LGALS14Q8TCE9 139 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RPS4Y2Q8TD47 263 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SNX33Q8WV41 574 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PMEPA1Q969W9 287 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RNF166Q96A37 237 aaPredicted RBP14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ORAI1Q96D31 301 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NMNAT3Q96T66 252 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MKKSQ9NPJ1 570 aaPredicted RBP14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF222Q9UK12 451 aa14.71□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 A0A087WUJ7 227 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TRABD2BA6NFA1 517 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms