RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 S100PP25815 95 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AIMP2Q13155 320 aaKnown RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KIR2DS3Q14952 304 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PLK5Q496M5 336 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CCDC107Q8WV48 283 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FCAMRQ8WWV6 532 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CD180Q99467 661 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF559Q9BR84 538 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PHF7Q9BWX1 381 aaPredicted RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 B3GNT4Q9C0J1 378 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 UPB1Q9UBR1 384 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KLF15Q9UIH9 416 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DIMT1Q9UNQ2 313 aaKnown RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ICE1Q9Y2F5 2266 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C17orf105B2RV13 164 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CBX7O95931 251 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SYPP08247 313 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GABRB1P18505 474 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SRP9P49458 86 aaKnown RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AKR1C2P52895 323 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AKR1C1Q04828 323 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DUSP2Q05923 314 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRAM2Q15035 370 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ENTPD8Q5MY95 495 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MRPL2Q5T653 305 aaKnown RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PRPF38BQ5VTL8 546 aaKnown RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM69BQ5VUD6 431 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC27A4Q6P1M0 643 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PXT1Q8NFP0 134 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM163Q8TC26 289 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM255BQ8WV15 326 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SHDQ96IW2 340 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OPALINQ96PE5 141 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 COPS7AQ9UBW8 275 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KIF25Q9UIL4 384 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PTPRDP23468 1912 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RIIAD1A6NNX1 92 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MCIDASD6RGH6 385 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LIM2P55344 173 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ALG10BQ5I7T1 473 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC48A1Q6P1K1 146 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C8orf82Q6P1X6 216 aaPredicted RBP9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FBXO42Q6P3S6 717 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CPOQ8IVL8 374 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4F15Q8NGB8 312 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MARC2Q969Z3 335 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 UPRTQ96BW1 309 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC52A3Q9NQ40 469 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 THSD1Q9NS62 852 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC17A4Q9Y2C5 497 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MTCH2Q9Y6C9 303 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VPS13AQ96RL7 3174 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TSPAN11A1L157 253 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR5K3A6NET4 321 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CHP2O43745 196 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GSTM3P21266 225 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BMP8BP34820 402 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DLX5P56178 289 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GPR139Q6DWJ6 353 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BMP8AQ7Z5Y6 402 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC41A3Q96GZ6 507 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 COX14Q96I36 57 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF354BQ96LW1 612 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CNTNAP3BQ96NU0 1288 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CDCA4Q9BXL8 241 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR2S2Q9NQN1 319 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EXO1Q9UQ84 846 aaKnown RBP9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VDAC3Q9Y277 283 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MED31Q9Y3C7 131 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SIT1Q9Y3P8 196 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CDH10Q9Y6N8 788 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HEATR5BQ9P2D3 2071 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 G3V3Y1 287 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GOSR2O14653 212 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BCAT2O15382 392 aaPredicted RBP9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MAGEB4O15481 346 aaPredicted RBP9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CSN2P05814 226 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF273Q14593 569 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FRRS1Q6ZNA5 592 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EID2Q8N6I1 236 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 POGLUT1Q8NBL1 392 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 S100A16Q96FQ6 103 aaKnown RBP9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 WFDC6Q9BQY6 131 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FN3KQ9H479 309 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NDRG3Q9UGV2 375 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SERTAD3Q9UJW9 196 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SCML1Q9UN30 329 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 IGKV1-8A0A0C4DH67 115 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR6C65A6NJZ3 312 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 F5H5P2 479 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DOK2O60496 412 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SC5DO75845 299 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AGTR1P30556 359 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PEA15Q15121 130 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DCST2Q5T1A1 773 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SHEQ5VZ18 495 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TCTN3Q6NUS6 607 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C16orf47Q6ZP98 133 aaPredicted RBP9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC16A13Q7RTY0 426 aa9.92□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SIAH3Q8IW03 269 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms