RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 FAM111BQ6SJ93 734 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 ZNF704Q6ZNC4 412 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-213ENST00000492506 P4HA3Q7Z4N8 544 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 NUDT13Q86X67 352 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 HIPK1Q86Z02 1210 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 MIER2Q8N344 545 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 STX19Q8N4C7 294 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 LINC00469Q8N7U9 141 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 OR52E4Q8NGH9 312 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 STAG3L4Q8TBR4 150 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 WDR20Q8TBZ3 569 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 RNF138Q8WVD3 245 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 NSMCE2Q96MF7 247 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 CITED4Q96RK1 184 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 TMEM204Q9BSN7 226 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 SLC22A4Q9H015 551 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 NARFLQ9H6Q4 476 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 RNF122Q9H9V4 155 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 MAT2BQ9NZL9 334 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 CES1P1Q9UKY3 287 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 USP22Q9UPT9 525 aa11.77□□□□□ -0.53
HDAC3-213ENST00000492506 OR6C70A6NIJ9 312 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 C17orf51A8MQB3 221 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 TO15178 435 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 RGS10O43665 173 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 SNAPC5O75971 98 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 CLIC3O95833 236 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 CBX7O95931 251 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 HTR1AP08908 422 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 DRD5P21918 477 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 GZMKP49863 264 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 EMDP50402 254 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 GAS1P54826 345 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 RAB10P61026 200 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 SIRPAP78324 504 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 EMX1Q04741 257 aaPredicted RBP11.76□□□□□ -0.53
HDAC3-213ENST00000492506 BEX5Q5H9J7 111 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 OR5M10Q6IEU7 315 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 KRT73Q86Y46 540 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 RIMKLAQ8IXN7 391 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 PARP16Q8N5Y8 322 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 ZNF611Q8N823 705 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 TMEM158Q8WZ71 300 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 GTF2H4Q92759 462 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 SNAPC3Q92966 411 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 ZNF845Q96IR2 970 aaPredicted RBP11.76□□□□□ -0.53
HDAC3-213ENST00000492506 TOR3AQ9H497 397 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 ALG2Q9H553 416 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 ING3Q9NXR8 418 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 CCDC167Q9P0B6 97 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 PCDHA9Q9Y5H5 950 aa11.76□□□□□ -0.53
HDAC3-213ENST00000492506 LEUTXA8MZ59 168 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 SUPT3HB4E1H0 165 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 OVOL3O00110 214 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 FOXE1O00358 373 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-213ENST00000492506 KERAO60938 352 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 ANGPTL1O95841 491 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 F12P00748 615 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-213ENST00000492506 ATP1B1P05026 303 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 S100A6P06703 90 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 SPNP16150 400 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 TBXA2RP21731 343 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 PSMB9P28065 219 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 PPICP45877 212 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 KCNJ5P48544 419 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 SUCLG1P53597 346 aaKnown RBP11.75□□□□□ -0.53
HDAC3-213ENST00000492506 MAPK12P53778 367 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 DUSP2Q05923 314 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CD47Q08722 323 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CPSF6Q16630 551 aaKnown RBP eCLIP11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CLEC12BQ2HXU8 276 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 DPY19L1Q2PZI1 675 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 ARMC4Q5T2S8 1044 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 TMEM236Q5W0B7 351 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CCDC190Q86UF4 302 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 OR5K1Q8NHB7 308 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 TMBIM1Q969X1 311 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 LRRC58Q96CX6 371 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 SLC35A4Q96G79 324 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 COL21A1Q96P44 957 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CENPOQ9BU64 300 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 REG4Q9BYZ8 158 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CCDC90BQ9GZT6 254 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 TAS2R7Q9NYW3 318 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 KIF17Q9P2E2 1029 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 LEF1Q9UJU2 399 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-213ENST00000492506 GPR55Q9Y2T6 319 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-213ENST00000492506 ZNF175Q9Y473 711 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 CADP27708 2225 aa11.75□□□□□ -0.53
HDAC3-213ENST00000492506 FREM1Q5H8C1 2179 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.74□□□□□ -0.533e-16■■□□□ 14
HDAC3-213ENST00000492506 A0A1W2PRG6 482 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 MEIOCA2RUB1 952 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 CCDC182A6NF36 153 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 G3V2T6 193 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 HS3ST1O14792 307 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 TLX2O43763 284 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-213ENST00000492506 CD5LO43866 347 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 AIREO43918 545 aa11.74□□□□□ -0.53
HDAC3-213ENST00000492506 TPST1O60507 370 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms