RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 OR10A6Q8NH74 314 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 SLC26A7Q8TE54 656 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 FBXW5Q969U6 566 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 KTI12Q96EK9 354 aaPredicted RBP13.29□□□□□ -0.28
USP39-217ENST00000491659 EPYCQ99645 322 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 SH3GL1Q99961 368 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 PTDSS2Q9BVG9 487 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 RSPO3Q9BXY4 272 aaPredicted RBP13.29□□□□□ -0.28
USP39-217ENST00000491659 CXorf56Q9H5V9 222 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 SLC7A10Q9NS82 523 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 KLHL14Q9P2G3 628 aa13.29□□□□□ -0.28
USP39-217ENST00000491659 PRR14LQ5THK1 2151 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 TRAV36DV7A0A075B6V5 113 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 A0A0B4J2E0 115 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 A0A1B0GX12 115 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 AIM2O14862 343 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 TMCC2O75069 709 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 KRT33AO76009 404 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 MPGP29372 298 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 OR1Q1Q15612 314 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 GABRA6Q16445 453 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 SWT1Q5T5J6 900 aaKnown RBP13.28□□□□□ -0.28
USP39-217ENST00000491659 C9orf135Q5VTT2 229 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 REP15Q6BDI9 236 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 KLHL17Q6TDP4 642 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 CREB3L2Q70SY1 520 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 C17orf78Q8N4C9 275 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 ZIC4Q8N9L1 334 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 KBTBD8Q8NFY9 601 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 OR8J3Q8NGG0 315 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 PERPQ96FX8 193 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 ARHGDIGQ99819 225 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 PRR14Q9BWN1 585 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 SAR1AQ9NR31 198 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 CAPN7Q9Y6W3 813 aa13.28□□□□□ -0.28
USP39-217ENST00000491659 DPRXA6NFQ7 191 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 OR6C65A6NJZ3 312 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 M0QX08 132 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 M0R3H8 397 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 PDLIM1O00151 329 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 FMO6PO60774 539 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 FZD7O75084 574 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 LGI1O95970 557 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 NPPAP01160 153 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 C8BP07358 591 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 ZNF43P17038 809 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 FOXG1P55316 489 aaPredicted RBP13.27□□□□□ -0.29
USP39-217ENST00000491659 IL1RL1Q01638 556 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 MFSD13AQ14CX5 517 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 NRF1Q16656 503 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 VMACQ2NL98 169 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 ZNF672Q499Z4 452 aaPredicted RBP13.27□□□□□ -0.29
USP39-217ENST00000491659 NANOGP8Q6NSW7 305 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 NIPAL3Q6P499 406 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 KLHL24Q6TFL4 600 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 TMEM108Q6UXF1 575 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 SNX32Q86XE0 403 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 KRTAP1-3Q8IUG1 177 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 PCYOX1LQ8NBM8 494 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 RASSF5Q8WWW0 418 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 LRRC58Q96CX6 371 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 MUS81Q96NY9 551 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 MCHR1Q99705 422 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 ECSITQ9BQ95 431 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 AMBRA1Q9C0C7 1298 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 NANOGQ9H9S0 305 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 NPAP1Q9NZP6 1156 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 AMDHD2Q9Y303 409 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 SLC25A15Q9Y619 301 aa13.27□□□□□ -0.29
USP39-217ENST00000491659 IGKV1D-42A0A075B6H8 117 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 A0A087WUJ7 227 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 A0A1W2PR80 420 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 ZNF587BE7ETH6 402 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 M0R082 166 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 FXYD1O00168 92 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 ABCD4O14678 606 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 SLC22A2O15244 555 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 AKAP8O43823 692 aaKnown RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 FOSL1P15407 271 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 GRPRP30550 384 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 MDH1P40925 334 aaKnown RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 PTH2RP49190 550 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 SELENOPP49908 381 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 ZNF83P51522 516 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 CDH11P55287 796 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 RIPPLY3P57055 190 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 RPS4XP62701 263 aaKnown RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 DUSP7Q16829 419 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 RABL3Q5HYI8 236 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 ZNF613Q6PF04 617 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 EPHX4Q8IUS5 362 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 VANGL1Q8TAA9 524 aaPredicted RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 ZNF417Q8TAU3 575 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 TAAR8Q969N4 342 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 OXGR1Q96P68 337 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 ALKBH3Q96Q83 286 aaPredicted RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 ZNF587Q96SQ5 575 aaPredicted RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 GSX2Q9BZM3 304 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 GID8Q9NWU2 228 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 MGAT4BQ9UQ53 548 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms