RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 CLEC12BQ2HXU8 276 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 TMEM176BQ3YBM2 270 aaPredicted RBP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 CCNJQ5T5M9 372 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 LIPMQ5VYY2 423 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 CDC73Q6P1J9 531 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 LRIG3Q6UXM1 1119 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 Q6ZT83 130 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 ALPK2Q86TB3 2170 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 DTX2Q86UW9 622 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 C10orf107Q8IVU9 208 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 IFT20Q8IY31 132 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 SLC43A2Q8N370 569 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 PRR18Q8N4B5 295 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 EIF1ADQ8N9N8 165 aaKnown RBP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 OR7A2PQ8NGA2 310 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 FBXO30Q8TB52 745 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 NTN5Q8WTR8 489 aaPredicted RBP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 SMAP2Q8WU79 429 aaPredicted RBP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 NEUROG1Q92886 237 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 CDS1Q92903 461 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 PPCDCQ96CD2 204 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 COQ8BQ96D53 544 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 SH3YL1Q96HL8 342 aaPredicted RBP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 TSSK3Q96PN8 268 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 TRMOQ9BU70 441 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 GATA5Q9BWX5 397 aaPredicted RBP5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 REG4Q9BYZ8 158 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 HOXD1Q9GZZ0 328 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 TMEM185BQ9H7F4 350 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 TIGARQ9NQ88 270 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 KLHL13Q9P2N7 655 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 TBK1Q9UHD2 729 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 RNF115Q9Y4L5 304 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 KCNE3Q9Y6H6 103 aa5.61□□□□□ -1.51
PRPF40A-210ENST00000489741 ZNF724A8MTY0 619 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 SHISA9B4DS77 424 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 KIF2AO00139 706 aaPredicted RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 EIF4E2O60573 245 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 CYTIPO60759 359 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 IGHV4-39P01824 125 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 HPGDP15428 266 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 EFNA1P20827 205 aaPredicted RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 EDNRAP25101 427 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 SFTPDP35247 375 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 IDUAP35475 653 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ASMTP46597 345 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 OR3A2P47893 321 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 CCT3P49368 545 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 P2RX1P51575 399 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ATP12AP54707 1039 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 LASP1Q14847 261 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 PCLAFQ15004 111 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 XKR7Q5GH72 579 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 CFAP157Q5JU67 520 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 FCRLAQ7L513 359 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 R3HCC1LQ7Z5L2 792 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 HIPK1Q86Z02 1210 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 RIMKLAQ8IXN7 391 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 COX18Q8N8Q8 333 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 MAPK1IP1LQ8NDC0 245 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 OR5W2Q8NH69 310 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 CLHC1Q8NHS4 586 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 OR5P2Q8WZ92 322 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 OTUB1Q96FW1 271 aaPredicted RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 TRMT61AQ96FX7 289 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 PSD2Q9BQI7 771 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 TRAF4Q9BUZ4 470 aaPredicted RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ACTRT3Q9BYD9 372 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 SLCO5A1Q9H2Y9 848 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ESRP2Q9H6T0 727 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 CXorf36Q9H7Y0 433 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ANKZF1Q9H8Y5 726 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ZCCHC3Q9NUD5 404 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 MRPS18AQ9NVS2 196 aaKnown RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ETAA1Q9NY74 926 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 ZDHHC8Q9ULC8 765 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 LIPT1Q9Y234 373 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 CARD8Q9Y2G2 431 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 DTNAQ9Y4J8 743 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 MAGED1Q9Y5V3 778 aaPredicted RBP5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 SNX8Q9Y5X2 465 aa5.6□□□□□ -1.51
PRPF40A-210ENST00000489741 PLCE1Q9P212 2302 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 IGKV3D-15A0A087WSY6 115 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 IGHV3-15A0A0B4J1V0 119 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 NPIPA5A0A0B4J1W7 369 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 PRSS29PA6NIE9 313 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 GJE1A6NN92 205 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 TMEM233B4DJY2 109 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 NPIPA7E9PJI5 369 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 H3BUI4 141 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 M0QYG6 137 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 COPEO14579 308 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 SCAMP2O15127 329 aaKnown RBP5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 SMAD9O15198 467 aaKnown RBP5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 TLX2O43763 284 aaPredicted RBP5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 CD5LO43866 347 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 RAMP1O60894 148 aa5.59□□□□□ -1.51
PRPF40A-210ENST00000489741 NDUFS7O75251 213 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms