RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 AAED1Q7RTV5 226 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ADGRG3Q86Y34 549 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 PTOV1Q86YD1 416 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 UEVLDQ8IX04 471 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 DEFB107AQ8IZN7 70 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 PGAM4Q8N0Y7 254 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 RNF148Q8N7C7 305 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SCAIQ8N9R8 606 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 RELL2Q8NC24 303 aaPredicted RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 STEAP2Q8NFT2 490 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ADAMTS16Q8TE57 1224 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 RNF128Q8TEB7 428 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 FAM222BQ8WU58 562 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 C3orf49Q96BT1 292 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 NTNG2Q96CW9 530 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 WDR89Q96FK6 387 aaPredicted RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 MPP4Q96JB8 637 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ARL5BQ96KC2 179 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 NSMCE2Q96MF7 247 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 NPAS1Q99742 590 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 KCNS3Q9BQ31 491 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 HDHD5Q9BXW7 423 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 POLDIP3Q9BY77 421 aaKnown RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 POLR2J2Q9GZM3 115 aaKnown RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 POLR2J3Q9H1A7 115 aaKnown RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 COQ10BQ9H8M1 238 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 C12orf10Q9HB07 376 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SLC52A3Q9NQ40 469 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 NANSQ9NR45 359 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 KCNN3Q9UGI6 736 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SLC7A7Q9UM01 511 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 RASD1Q9Y272 281 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 CORINQ9Y5Q5 1042 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 GMEB1Q9Y692 573 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 V9GYQ6 96 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 UBR5O95071 2799 aaPredicted RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 OR6C65A6NJZ3 312 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 A8MXE2 369 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 KDM4EB2RXH2 506 aaPredicted RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 C11orf98E9PRG8 122 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 GYG2O15488 501 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 RNF13O43567 381 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 CHP2O43745 196 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 TPST1O60507 370 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 FMO6PO60774 539 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 BCAS1O75363 584 aaPredicted RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 ADORA3P0DMS8 318 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 SAGP10523 405 aaPredicted RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 PRG2P13727 222 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 PPP3CBP16298 524 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 CDH2P19022 906 aaPredicted RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 PTNP21246 168 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 PSMA4P25789 261 aaKnown RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 GUCA1AP43080 201 aaPredicted RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 CAPZA2P47755 286 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 OR1E2P47887 323 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 GSK3BP49841 420 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 SELENOWP63302 87 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 DUSP7Q16829 419 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 CTU2Q2VPK5 515 aaKnown RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 GLIPR1L2Q4G1C9 344 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 FGD3Q5JSP0 725 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 HMBOX1Q6NT76 420 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 NIPAL3Q6P499 406 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 LINC00114Q6XXX2 140 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 ZNF730Q6ZMV8 503 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 SEM1Q6ZVN7 128 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 CCDC80Q76M96 950 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 HDDC2Q7Z4H3 204 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 NANOGNBQ7Z5D8 188 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 PIGWQ7Z7B1 504 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 ATG4DQ86TL0 474 aaPredicted RBP7.16□□□□□ -1.26
USP40-216ENST00000485943 LIX1LQ8IVB5 337 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 SLC15A3Q8IY34 581 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 ARHGAP24Q8N264 748 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 GPR137CQ8N3F9 429 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 LSMEM1Q8N8F7 131 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 ZNF610Q8N9Z0 462 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 MFSD8Q8NHS3 518 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 LINC01560Q8TB33 94 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 TAMM41Q96BW9 452 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 STARD4Q96DR4 205 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 SLC41A3Q96GZ6 507 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 HS6ST2Q96MM7 605 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 ZNF583Q96ND8 569 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 CDRT15Q96T59 188 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 ASB6Q9NWX5 421 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 POU2F3Q9UKI9 436 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 MED31Q9Y3C7 131 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 HCFC1P51610 2035 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 CACNA1DQ01668 2161 aa7.16□□□□□ -1.26
USP40-216ENST00000485943 LRRK2Q5S007 2527 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 A0A087WUJ7 227 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 A0A1W2PRG6 482 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 LIPT2A6NK58 231 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 ZNF724A8MTY0 619 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 B4DXG7 233 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 ZNF587BE7ETH6 402 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 C19orf84I3L1E1 186 aa7.15□□□□□ -1.26
USP40-216ENST00000485943 SMAD9O15198 467 aaKnown RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms