RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 NOS3P29474 1203 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 SDHAP31040 664 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 CEACAM6P40199 344 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 AVPR1BP47901 424 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 SELENOPP49908 381 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 HTR6P50406 440 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 NR0B1P51843 470 aaKnown RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 SOX8P57073 446 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 TAP2Q03519 686 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 C1DQ13901 141 aaKnown RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 KCNMB1Q16558 191 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 ANXA8L1Q5VT79 327 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 MZT2AQ6P582 158 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 ALKAL2Q6UX46 152 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 PLXDC1Q8IUK5 500 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 LAS2Q8IYD9 372 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 SIDT2Q8NBJ9 832 aaKnown RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 CNOT9Q92600 299 aaKnown RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 RFT1Q96AA3 541 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 TCTN2Q96GX1 697 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 NARS2Q96I59 477 aaKnown RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 SLC46A1Q96NT5 459 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 GPR21Q99679 349 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 NIPSNAP1Q9BPW8 284 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 THAP7Q9BT49 309 aaPredicted RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 SPATA5L1Q9BVQ7 753 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 TMPRSS13Q9BYE2 586 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 DPH1Q9BZG8 443 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 DPY30Q9C005 99 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 OR51B6Q9H340 312 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 METTL17Q9H7H0 456 aaPredicted RBP7.05□□□□□ -1.28
USP4-211ENST00000485450 SPACA1Q9HBV2 294 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 SLC6A20Q9NP91 592 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 RLIMQ9NVW2 624 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 NUDT4Q9NZJ9 180 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 KCNK6Q9Y257 313 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 CCL27Q9Y4X3 112 aa7.05□□□□□ -1.28
USP4-211ENST00000485450 A0A0J9YY10 115 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 METTL21EPA6NDL7 271 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 TNFRSF11BO00300 401 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 TBX6O95947 436 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 AHCYP23526 432 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 MSX1P28360 303 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 FGF9P31371 208 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 AGTR2P50052 363 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 MRPS11P82912 194 aaKnown RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 REEP5Q00765 189 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 HLXQ14774 488 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 VMACQ2NL98 169 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 SFRP5Q5T4F7 317 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 HAGHLQ6PII5 290 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 QSOX2Q6ZRP7 698 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PTCHD4Q6ZW05 846 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PGAP1Q75T13 922 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 LDB1Q86U70 411 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 TRAPPC5Q8IUR0 188 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 WDSUB1Q8N9V3 476 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ZNF383Q8NA42 475 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 OR4C15Q8NGM1 316 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 OR5AR1Q8NGP9 310 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 EEF1AKMT1Q8WVE0 214 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ELMOD3Q96FG2 381 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 DDOQ99489 341 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 METTL9Q9H1A3 318 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ZFP57Q9NU63 452 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 STOX2Q9P2F5 926 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 CLCA2Q9UQC9 943 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 SDK2Q58EX2 2172 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 SMIM30A4D0T7 59 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 RFPL4AA6NLU0 287 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ZAR1LA6NP61 321 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 RFPL4AL1F8VTS6 287 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 GPR31O00270 319 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 GAAP10253 952 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 TFPIP10646 304 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ACPPP15309 386 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ZNF44P15621 663 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 CAV3P56539 151 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 RAB4BP61018 213 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 RBX1P62877 108 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 MAD2L1Q13257 205 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 GK2Q14410 553 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 PTGES3Q15185 160 aaKnown RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 PYY3Q5JQD4 70 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PRAMEF13Q5VWM6 474 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PAQR3Q6TCH7 311 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ASB18Q6ZVZ8 466 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 LRRC70Q7Z2Q7 622 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 OR5M9Q8NGP3 310 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 OR10G6Q8NH81 332 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 PATE1Q8WXA2 126 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 ZNF764Q96H86 408 aaPredicted RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 CCDC74BQ96LY2 380 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 MAPKAP1Q9BPZ7 522 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 RNF122Q9H9V4 155 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 SF3B6Q9Y3B4 125 aaKnown RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 MCRIP1C9JLW8 97 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 SSNA1O43805 119 aa7.04□□□□□ -1.28
USP4-211ENST00000485450 LCMT2O60294 686 aaKnown RBP7.04□□□□□ -1.28
USP4-211ENST00000485450 RAD1O60671 282 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms