RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 MTCP1P56278 107 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 AP1S2P56377 157 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 CXCR4P61073 352 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 PPP1CAP62136 330 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 PRDX1Q06830 199 aaKnown RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 ITGADQ13349 1161 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 KEAP1Q14145 624 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 FASTKD3Q14CZ7 662 aaKnown RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 MICBQ29980 383 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 TTLL9Q3SXZ7 439 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 FBXO42Q6P3S6 717 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 PRSS57Q6UWY2 283 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 C3P1Q6ZMU1 363 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 FAM92BQ6ZTR7 304 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 IGFN1Q86VF2 1251 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 ZNF808Q8N4W9 903 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 AMER2Q8N7J2 671 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 BOLLQ8N9W6 283 aaKnown RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 OR5AR1Q8NGP9 310 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 FBXL8Q96CD0 374 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 JMJD8Q96S16 334 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 MTERF1Q99551 399 aaKnown RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 CENPKQ9BS16 269 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 BEX2Q9BXY8 128 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 PELI2Q9HAT8 420 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 PARVBQ9HBI1 364 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 DNAJC4Q9NNZ3 241 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 SLC2A6Q9UGQ3 507 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 SNX12Q9UMY4 172 aa4.79□□□□□ -1.64
CCDC39-205ENST00000485055 CSDC2Q9Y534 153 aaKnown RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 HEMK1Q9Y5R4 338 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-205ENST00000485055 C9J4A7 227 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 TMEM238C9JI98 176 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 DYNC1I1O14576 645 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 OR2T7P0C7T2 308 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 HTR2AP28223 471 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 SERPINB8P50452 374 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 GPR143P51810 404 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 PAX5Q02548 391 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ZNF33BQ06732 778 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 BIKQ13323 160 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 POU6F1Q14863 301 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 OR52W1Q6IF63 320 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 FAM159AQ6UWV7 190 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CYP2R1Q6VVX0 501 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ZNF841Q6ZN19 808 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ETV3LQ6ZN32 361 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 MRGPREQ86SM8 312 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CDK20Q8IZL9 346 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 NATD1Q8N6N6 113 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 RBMXL3Q8N7X1 1067 aaKnown RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 SCAIQ8N9R8 606 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 OR4E2Q8NGC2 313 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 DACT3Q96B18 629 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 SENP5Q96HI0 755 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 AKR1E2Q96JD6 320 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 OR2A5Q96R48 311 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 C20orf24Q9BUV8 137 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 VIPAS39Q9H9C1 493 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 PLAC1Q9HBJ0 212 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 FAM60AQ9NP50 221 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 MYEF2Q9P2K5 600 aaKnown RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 RHCGQ9UBD6 479 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 PHF11Q9UIL8 331 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 NOX1Q9Y5S8 564 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CEP295Q9C0D2 2601 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 SHANK1Q9Y566 2161 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ANKRD12Q6UB98 2062 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 APC2O95996 2303 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ZNF99A8MXY4 864 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 TMEM150CB9EJG8 249 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 PRSS46E5RG02 174 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 NPIPA2E9PIF3 369 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 E9PQ18 207 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CLDN4O14493 209 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CNOT3O75175 753 aaKnown RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 FGGP02679 453 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ZNF182P17025 639 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ITGA2P17301 1181 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ACKR3P25106 362 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CMPK1P30085 196 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 AHRP35869 848 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 RPS15AP62244 130 aaKnown RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 LSM11P83369 360 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 NAAAQ02083 359 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 LY6DQ14210 128 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 CTU2Q2VPK5 515 aaKnown RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 LGSNQ5TDP6 509 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 FAM69BQ5VUD6 431 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 GPR107Q5VW38 600 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 LCN10Q6JVE6 187 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ZNF549Q6P9A3 640 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 MEPCEQ7L2J0 689 aaKnown RBP4.78□□□□□ -1.64
CCDC39-205ENST00000485055 VRK3Q8IV63 474 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 ST6GALNAC3Q8NDV1 305 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 STXBP6Q8NFX7 210 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 BOD1Q96IK1 185 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 FOPNLQ96NB1 174 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 SERPINB12Q96P63 405 aa4.78□□□□□ -1.64
CCDC39-205ENST00000485055 TOLLIPQ9H0E2 274 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms