RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 THUMPD1Q9NXG2 353 aaKnown RBP18.85■□□□□ 0.61
USP40-215ENST00000484528 MOKQ9UQ07 419 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 IFT52Q9Y366 437 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 CD5LO43866 347 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 NPIPB7O75200 414 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 HOXB9P17482 250 aaPredicted RBP18.84■□□□□ 0.61
USP40-215ENST00000484528 RPS5P46782 204 aaKnown RBP18.84■□□□□ 0.61
USP40-215ENST00000484528 STX1BP61266 288 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 RAB35Q15286 201 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 ZSWIM7Q19AV6 140 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 BEND6Q5SZJ8 279 aaPredicted RBP18.84■□□□□ 0.61
USP40-215ENST00000484528 ZNF544Q6NX49 715 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 NIPAL3Q6P499 406 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 CLEC2AQ6UVW9 174 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 CREB3L2Q70SY1 520 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 EPHX4Q8IUS5 362 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 KDM8Q8N371 416 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 BBS10Q8TAM1 723 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 SLC25A37Q9NYZ2 338 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 SEC14L4Q9UDX3 406 aa18.84■□□□□ 0.61
USP40-215ENST00000484528 A0A096LPI6 279 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 C5orf58C9J3I9 102 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 ZNF587BE7ETH6 402 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 NR5A2O00482 541 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 POLR3GO15318 223 aaPredicted RBP18.83■□□□□ 0.6
USP40-215ENST00000484528 WNT11O96014 354 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 PNMTP11086 282 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 TUBA1BP68363 451 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 TUBA4AP68366 448 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 EGR4Q05215 589 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 FADDQ13158 208 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 TBRG1Q3YBR2 411 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 TUBA1AQ71U36 451 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 LINGO2Q7L985 606 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 ABHD12BQ7Z5M8 362 aaPredicted RBP18.83■□□□□ 0.6
USP40-215ENST00000484528 MSRB3Q8IXL7 192 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 C10orf111Q8N326 155 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 GOLGA6L1Q8N7Z2 621 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 OR1K1Q8NGR3 316 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 NFKBIDQ8NI38 313 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 KTI12Q96EK9 354 aaPredicted RBP18.83■□□□□ 0.6
USP40-215ENST00000484528 EBF4Q9BQW3 602 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 PTDSS2Q9BVG9 487 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 RSPO3Q9BXY4 272 aaPredicted RBP18.83■□□□□ 0.6
USP40-215ENST00000484528 RAD21L1Q9H4I0 556 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 BCL2L10Q9HD36 194 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 SLCO1B3Q9NPD5 702 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 TCF7L2Q9NQB0 619 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 TMEM45AQ9NWC5 275 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 SLAMF8Q9P0V8 285 aa18.83■□□□□ 0.6
USP40-215ENST00000484528 MXRA5Q9NR99 2828 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 A0A096LNT2 108 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 ELOA3DA6NLF2 546 aaPredicted RBP18.82■□□□□ 0.6
USP40-215ENST00000484528 FTCDNL1E5RQL4 147 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 UPK3AO75631 287 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 LY6HO94772 140 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 VAMP5O95183 116 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 BMP2P12643 396 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 ELOA3BQ3SY89 546 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 COMTD1Q86VU5 262 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 ELOA3Q8NG57 546 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 OR10H5Q8NGA6 315 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 STK35Q8TDR2 534 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 FBXO17Q96EF6 278 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 C7orf26Q96N11 449 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 PIF1Q9H611 641 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 RPS6KB2Q9UBS0 482 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 RASD1Q9Y272 281 aa18.82■□□□□ 0.6
USP40-215ENST00000484528 FBN1P35555 2871 aaKnown RBP18.81■□□□□ 0.6
USP40-215ENST00000484528 A0A096LPE4 126 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 IGHV1-18A0A0C4DH31 117 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 A0A1W2PPZ6 126 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 H7C417 338 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 TLX2O43763 284 aaPredicted RBP18.81■□□□□ 0.6
USP40-215ENST00000484528 GTF2E2P29084 291 aaKnown RBP18.81■□□□□ 0.6
USP40-215ENST00000484528 IDH3AP50213 366 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 CLDN17P56750 224 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 GCNT6Q5T4J0 391 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 FUNDC1Q8IVP5 155 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 MFSD8Q8NHS3 518 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 PRR14Q9BWN1 585 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 CCDC167Q9P0B6 97 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 PRDM4Q9UKN5 801 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 STAB1Q9NY15 2570 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 MALRD1Q5VYJ5 2156 aa18.81■□□□□ 0.6
USP40-215ENST00000484528 ARAFP10398 606 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 HTR2AP28223 471 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 APOBEC3AP31941 199 aaPredicted RBP18.8■□□□□ 0.6
USP40-215ENST00000484528 UBE2NP61088 152 aaKnown RBP18.8■□□□□ 0.6
USP40-215ENST00000484528 CHRNB3Q05901 458 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 GLIPR1L2Q4G1C9 344 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 PAGE3Q5JUK9 113 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 LRIF1Q5T3J3 769 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 BLOC1S3Q6QNY0 202 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 LRRC8CQ8TDW0 803 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 SPDL1Q96EA4 605 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 SLC38A2Q96QD8 506 aa18.8■□□□□ 0.6
USP40-215ENST00000484528 A0A1B0GWA3 101 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 TPST1O60507 370 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 ETS2P15036 469 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms