RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 Q6ZN92 141 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 SHISA6Q6ZSJ9 500 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 NEGR1Q7Z3B1 354 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 SNX32Q86XE0 403 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 OR2L13Q8N349 312 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 CATSPER1Q8NEC5 780 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 OR4F15Q8NGB8 312 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 OR10A7Q8NGE5 316 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 OR4D9Q8NGE8 314 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 OR52P1PQ8NH57 321 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 ZNF461Q8TAF7 563 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 MCOLN3Q8TDD5 553 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 HTR3CQ8WXA8 447 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 SMARCD2Q92925 531 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 PAGE5Q96GU1 130 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 TMEM246Q9BRR3 403 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 SPXQ9BT56 116 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 ZNF416Q9BWM5 594 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 OSBPL11Q9BXB4 747 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 PLA2G12AQ9BZM1 189 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 POLR1EQ9GZS1 481 aaKnown RBP0.66□□□□□ -2.3
UBXN4-207ENST00000471246 RNF167Q9H6Y7 350 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 NOX3Q9HBY0 568 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 SLC40A1Q9NP59 571 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 GNG12Q9UBI6 72 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 TBK1Q9UHD2 729 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 PCYOX1Q9UHG3 505 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 GGA2Q9UJY4 613 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 ZNF222Q9UK12 451 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 NOL7Q9UMY1 257 aaKnown RBP0.66□□□□□ -2.3
UBXN4-207ENST00000471246 RASD1Q9Y272 281 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 CARMIL1Q5VZK9 1371 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 ERCC6L2Q5T890 1561 aa0.66□□□□□ -2.3
UBXN4-207ENST00000471246 AHNAK2Q8IVF2 5795 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 A0A0C4DFX4 3053 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 SEC16AO15027 2179 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 NSG1A0A0A6YYJ2 146 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 IGHV3-66A0A0C4DH42 116 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 A0A1W2PNV4 684 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 GSAPA4D1B5 854 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 C12orf77C9JDV5 145 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RPL36A-HNRNPH2H7BZ11 118 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 PEX7O00628 323 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RASGRF2O14827 1237 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 CHADO15335 359 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RS1O15537 224 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 NEBLO76041 1014 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 LRATO95237 230 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 MBD3O95983 291 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 OPN1MWP04001 364 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 KLK3P07288 261 aaPredicted RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 OPN1MW2P0DN77 364 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 OPN1MW3P0DN78 364 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ZNF30P17039 623 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 PGAM1P18669 254 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 POLR2EP19388 210 aaKnown RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 COX5AP20674 150 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 CNR1P21554 472 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 CMA1P23946 247 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 BTCP35070 178 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RFC4P35249 363 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RABIFP47224 123 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ACADVLP49748 655 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 PLA2G16P53816 162 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 FGF8P55075 233 aaPredicted RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 STARD6P59095 220 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 HMGCS1Q01581 520 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 MEF2BQ02080 365 aaPredicted RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ACVR1Q04771 509 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 KLHL30Q0D2K2 578 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 MXD4Q14582 209 aaPredicted RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 SGCAQ16586 387 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 GUCA2BQ16661 112 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 SLC25A52Q3SY17 297 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 TP53I3Q53FA7 332 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 SAMD4BQ5PRF9 694 aaKnown RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 SLC10A5Q5PT55 438 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 FAM71F2Q6NXP2 309 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 BRD3OSQ6XYD6 125 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RBM43Q6ZSC3 357 aaKnown RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ZNF546Q86UE3 836 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 LRP11Q86VZ4 500 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 PGAM4Q8N0Y7 254 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 CLDN19Q8N6F1 224 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ZNF713Q8N859 430 aaPredicted RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 MRPL43Q8N983 215 aaKnown RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 LINC00304Q8N9R0 145 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 STXBP6Q8NFX7 210 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 OR4K14Q8NGD5 310 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 RAET1EQ8TD07 263 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 MGARPQ8TDB4 240 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ACTRT1Q8TDG2 376 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 CD300LFQ8TDQ1 290 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 FAM3CQ92520 227 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 DNAJC19Q96DA6 116 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 MRPL38Q96DV4 380 aaKnown RBP0.65□□□□□ -2.31
UBXN4-207ENST00000471246 TM4SF19Q96DZ7 209 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 CMTM7Q96FZ5 175 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 SEC22AQ96IW7 307 aa0.65□□□□□ -2.31
UBXN4-207ENST00000471246 ITCHQ96J02 903 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms