RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 ZSWIM7Q19AV6 140 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 SWI5Q1ZZU3 235 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 CHRFAM7AQ494W8 412 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 RNF220Q5VTB9 566 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 ANKRD16Q6P6B7 361 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 PODNL1Q6PEZ8 512 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 SLC2A7Q6PXP3 512 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 KLHL24Q6TFL4 600 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 LINGO2Q7L985 606 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 ABHD12BQ7Z5M8 362 aaPredicted RBP11.59□□□□□ -0.55
CPSF4-210ENST00000469897 OR1K1Q8NGR3 316 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 GTF2H4Q92759 462 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 BCL2L2Q92843 193 aaPredicted RBP11.59□□□□□ -0.55
CPSF4-210ENST00000469897 MAL2Q969L2 176 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 C3orf49Q96BT1 292 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 BOD1Q96IK1 185 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 KCNK17Q96T54 332 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 PIF1Q9H611 641 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 ARMC7Q9H6L4 198 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 IFT52Q9Y366 437 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 PCDHB14Q9Y5E9 798 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 PRR14LQ5THK1 2151 aa11.59□□□□□ -0.55
CPSF4-210ENST00000469897 ANK3Q12955 4377 aaKnown RBP11.59□□□□□ -0.55
CPSF4-210ENST00000469897 A0A096LPE4 126 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 A0A1W2PPZ6 126 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 CLIC1O00299 241 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 SLC25A16P16260 332 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 RPS5P46782 204 aaKnown RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 SLC18A1P54219 525 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 UBE2NP61088 152 aaKnown RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 TUBA1BP68363 451 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 TUBA4AP68366 448 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 TBRG1Q3YBR2 411 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 C6orf52Q5T4I8 152 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 PRAMEF8Q5VWM4 474 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 PRAMEF7Q5VXH5 474 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 TUBA1AQ71U36 451 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 MIER2Q8N344 545 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 MFSD8Q8NHS3 518 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 STK35Q8TDR2 534 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 C10orf105Q8TEF2 133 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 KTI12Q96EK9 354 aaPredicted RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 PRR14Q9BWN1 585 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 RSPO3Q9BXY4 272 aaPredicted RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 PAIP1Q9H074 479 aaKnown RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 CACYBPQ9HB71 228 aaKnown RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 THUMPD1Q9NXG2 353 aaKnown RBP11.58□□□□□ -0.56
CPSF4-210ENST00000469897 NKIRAS1Q9NYS0 192 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 RASD1Q9Y272 281 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 HEATR5AQ86XA9 2040 aa11.58□□□□□ -0.56
CPSF4-210ENST00000469897 RNF212BA8MTL3 300 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 TMEM229AB2RXF0 380 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 FTCDNL1E5RQL4 147 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 ZNF587BE7ETH6 402 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 ZNF500O60304 480 aaPredicted RBP11.57□□□□□ -0.56
CPSF4-210ENST00000469897 AHSA1O95433 338 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 PNMTP11086 282 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 USF1P22415 310 aaPredicted RBP11.57□□□□□ -0.56
CPSF4-210ENST00000469897 SERPINF1P36955 418 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 CLDN17P56750 224 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 LSM11P83369 360 aaKnown RBP eCLIP11.57□□□□□ -0.56
CPSF4-210ENST00000469897 VLDLRP98155 873 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 EGR4Q05215 589 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 C1QTNF12Q5T7M4 302 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 CYB5R2Q6BCY4 276 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 VHLLQ6RSH7 139 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 EPGNQ6UW88 154 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 MSANTD1Q6ZTZ1 278 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 PROX1Q92786 737 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 ALKBH3Q96Q83 286 aaPredicted RBP11.57□□□□□ -0.56
CPSF4-210ENST00000469897 SLC38A2Q96QD8 506 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 VRK1Q99986 396 aaPredicted RBP11.57□□□□□ -0.56
CPSF4-210ENST00000469897 PTDSS2Q9BVG9 487 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 BCL2L10Q9HD36 194 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 A4GALTQ9NPC4 353 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 OBP2BQ9NPH6 170 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 SLAMF8Q9P0V8 285 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 SEC14L4Q9UDX3 406 aa11.57□□□□□ -0.56
CPSF4-210ENST00000469897 A0A096LPI6 279 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 OR6C65A6NJZ3 312 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 C5orf58C9J3I9 102 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 CRYAAP02489 173 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 OR4A8P0C604 315 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 IGHV4-31P0DP07 118 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 CBLP22681 906 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 ARF1P84077 181 aaKnown RBP11.56□□□□□ -0.56
CPSF4-210ENST00000469897 ROR2Q01974 943 aaKnown RBP11.56□□□□□ -0.56
CPSF4-210ENST00000469897 TAAR8Q969N4 342 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 FOXN4Q96NZ1 517 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 SORCS2Q96PQ0 1159 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 KCNS3Q9BQ31 491 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 REPIN1Q9BWE0 567 aaKnown RBP11.56□□□□□ -0.56
CPSF4-210ENST00000469897 BEX2Q9BXY8 128 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 TMBIM4Q9HC24 238 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 RPS6KB2Q9UBS0 482 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 USH1CQ9Y6N9 552 aa11.56□□□□□ -0.56
CPSF4-210ENST00000469897 FREM1Q5H8C1 2179 aa11.55□□□□□ -0.56
CPSF4-210ENST00000469897 NUP214P35658 2090 aaPredicted RBP11.55□□□□□ -0.56
CPSF4-210ENST00000469897 ARPC4-TTLL3A0A0A6YYG9 625 aa11.55□□□□□ -0.56
CPSF4-210ENST00000469897 TPST1O60507 370 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms