RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 KDM8Q8N371 416 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 OR9Q2Q8NGE9 314 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 OR6S1Q8NH40 331 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 BPIFA2Q96DR5 249 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 SGTBQ96EQ0 304 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 CCDC120Q96HB5 630 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 FAM46AQ96IP4 442 aaKnown RBP13.19□□□□□ -0.3
COL9A3-209ENST00000469852 PRRG4Q9BZD6 226 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 RNF122Q9H9V4 155 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 Q9UFV3 132 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 SAMHD1Q9Y3Z3 626 aaKnown RBP13.19□□□□□ -0.3
COL9A3-209ENST00000469852 PCNX1Q96RV3 2341 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 DOPEY2Q9Y3R5 2298 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 AQP7P3A6NL99 342 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF716A6NP11 495 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 CDC42EP2O14613 210 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 CLOCKO15516 846 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 DNPH1O43598 174 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 CYTIPO60759 359 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 KRT36O76013 467 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 HPRP00739 348 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 IGF2P01344 180 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 ASAH2BP0C7U1 165 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 CEACAM8P31997 349 aaPredicted RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 OMPP47874 163 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 SMIM11AP58511 58 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 FHL1Q13642 323 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 SF3B4Q15427 424 aaKnown RBP eCLIP13.18□□□□□ -0.31e-7■■■■□ 20.7
COL9A3-209ENST00000469852 GUSBP1Q15486 140 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 ATP6AP1Q15904 470 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 PAQR6Q6TCH4 344 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF771Q7L3S4 317 aaPredicted RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 ZER1Q7Z7L7 766 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 AMIGO2Q86SJ2 522 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 CCDC71Q8IV32 467 aaPredicted RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 RNF113BQ8IZP6 322 aaKnown RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF775Q96BV0 537 aaPredicted RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 INTS12Q96CB8 462 aaKnown RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 PSD2Q9BQI7 771 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 KLHL4Q9C0H6 718 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 YY1AP1Q9H869 796 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 REEP1Q9H902 201 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 CHST11Q9NPF2 352 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 DNAJB9Q9UBS3 223 aa13.18□□□□□ -0.3
COL9A3-209ENST00000469852 MAGED1Q9Y5V3 778 aaPredicted RBP13.18□□□□□ -0.3
COL9A3-209ENST00000469852 DIDO1Q9BTC0 2240 aaKnown RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 INTS1Q8N201 2190 aaKnown RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 USP9XQ93008 2570 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 A0A1B0GUH1 482 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 CLEC18AA5D8T8 446 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 MS4A18H0YCH9 400 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 GNGT2O14610 69 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 HNRNPRO43390 633 aaKnown RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 KLF4O43474 513 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 EIF1BO60739 113 aaKnown RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 RCBTB2O95199 551 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 MT-ATP6P00846 226 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 RNF224P0DH78 156 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 HOXB6P17509 224 aaKnown RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 TIMP3P35625 211 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 RASGEF1BQ0VAM2 473 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 CDSNQ15517 529 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 MS4A18Q3C1V0 323 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 RIPPLY2Q5TAB7 128 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 ANKRD34AQ69YU3 496 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF770Q6IQ21 691 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 PGBD2Q6P3X8 592 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 CLEC18BQ6UXF7 455 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 MAMDC2Q7Z304 686 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 TUSC5Q8IXB3 177 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 CLEC18CQ8NCF0 446 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 PIGXQ8TBF5 258 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 ZHX1-C8orf76Q96EF9 292 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 TM9SF2Q99805 663 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 PKP2Q99959 881 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 FKRPQ9H9S5 495 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 S100A14Q9HCY8 104 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 NANSQ9NR45 359 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 MRPL39Q9NYK5 338 aaKnown RBP13.17□□□□□ -0.3
COL9A3-209ENST00000469852 B3GAT1Q9P2W7 334 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF229Q9UJW7 825 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 TMCC3Q9ULS5 477 aa13.17□□□□□ -0.3
COL9A3-209ENST00000469852 TRAV27A0A087WT01 109 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 PLPP3O14495 311 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 RRP9O43818 475 aaKnown RBP13.16□□□□□ -0.3
COL9A3-209ENST00000469852 OR10H3O60404 316 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 CCNB2O95067 398 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 LDLRP01130 860 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 TMIGD3P0DMS9 266 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-209ENST00000469852 FCGR2AP12318 317 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 HLA-DOBP13765 273 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF26P17031 533 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-209ENST00000469852 EDNRAP25101 427 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 FASP25445 335 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 GTF2E2P29084 291 aaKnown RBP13.16□□□□□ -0.3
COL9A3-209ENST00000469852 NTF4P34130 210 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 SIRPAP78324 504 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 PMS2P3Q13401 168 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 SLC17A1Q14916 467 aa13.16□□□□□ -0.3
COL9A3-209ENST00000469852 MICAQ29983 383 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms