RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 TNFRSF13CQ96RJ3 184 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 ARMC7Q9H6L4 198 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 NKIRAS1Q9NYS0 192 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 MOKQ9UQ07 419 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 CHST2Q9Y4C5 530 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 PMF1-BGLAPU3KQ54 211 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 A0A096LPI6 279 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 ZNF587BE7ETH6 402 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 UBDO15205 165 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 VAMP5O95183 116 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 SLC25A16P16260 332 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 EFNA4P52798 201 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 SLC18A1P54219 525 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 LGALS3BPQ08380 585 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 LOXL1Q08397 574 aaPredicted RBP16.73■□□□□ 0.27
COL9A3-206ENST00000466532 CHRFAM7AQ494W8 412 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 C6orf52Q5T4I8 152 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 PRAMEF8Q5VWM4 474 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 PRAMEF7Q5VXH5 474 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 PODNL1Q6PEZ8 512 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 CREB3L2Q70SY1 520 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 OR1K1Q8NGR3 316 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 BOD1Q96IK1 185 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 ALKBH3Q96Q83 286 aaPredicted RBP16.73■□□□□ 0.27
COL9A3-206ENST00000466532 OBP2BQ9NPH6 170 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 TMEM45AQ9NWC5 275 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 IFT52Q9Y366 437 aa16.73■□□□□ 0.27
COL9A3-206ENST00000466532 MALRD1Q5VYJ5 2156 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 TMEM229AB2RXF0 380 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 NPIPB7O75200 414 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 AHSA1O95433 338 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 LGI1O95970 557 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 IFNA2P01563 188 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 MAGOHP61326 146 aaKnown RBP16.72■□□□□ 0.27
COL9A3-206ENST00000466532 TBRG1Q3YBR2 411 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 ZNF311Q5JNZ3 666 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 NIPAL3Q6P499 406 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 EPHX4Q8IUS5 362 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 MIER2Q8N344 545 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 STK35Q8TDR2 534 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 FBXO17Q96EF6 278 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 RASD1Q9Y272 281 aa16.72■□□□□ 0.27
COL9A3-206ENST00000466532 IGHV1-18A0A0C4DH31 117 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 OR6C65A6NJZ3 312 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 ZNF500O60304 480 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-206ENST00000466532 LY6HO94772 140 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 CSF3P09919 207 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 NUDT7P0C024 238 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 VLDLRP98155 873 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 HOXC5Q00444 222 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 RGNQ15493 299 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 LINGO2Q7L985 606 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 MFSD8Q8NHS3 518 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 C10orf105Q8TEF2 133 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 NANOS1Q8WY41 292 aaKnown RBP16.71■□□□□ 0.27
COL9A3-206ENST00000466532 GTF2H4Q92759 462 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 SLC25A36Q96CQ1 311 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 SLC38A2Q96QD8 506 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 KCNS3Q9BQ31 491 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 PAIP1Q9H074 479 aaKnown RBP16.71■□□□□ 0.27
COL9A3-206ENST00000466532 RAD21L1Q9H4I0 556 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 PCDHB14Q9Y5E9 798 aa16.71■□□□□ 0.27
COL9A3-206ENST00000466532 CLIC1O00299 241 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 UPK3AO75631 287 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 PNMTP11086 282 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 GTF2E2P29084 291 aaKnown RBP16.7■□□□□ 0.26
COL9A3-206ENST00000466532 RPS5P46782 204 aaKnown RBP16.7■□□□□ 0.26
COL9A3-206ENST00000466532 UBE2NP61088 152 aaKnown RBP16.7■□□□□ 0.26
COL9A3-206ENST00000466532 SWI5Q1ZZU3 235 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 MST1LQ2TV78 715 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 SLC2A7Q6PXP3 512 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 KDM8Q8N371 416 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 BBS10Q8TAM1 723 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 PROX1Q92786 737 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 BCL2L2Q92843 193 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-206ENST00000466532 MAL2Q969L2 176 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 PTDSS2Q9BVG9 487 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 BCL2L10Q9HD36 194 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 A4GALTQ9NPC4 353 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 RPS6KB2Q9UBS0 482 aa16.7■□□□□ 0.26
COL9A3-206ENST00000466532 C5orf58C9J3I9 102 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 FTCDNL1E5RQL4 147 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 NR5A2O00482 541 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 F12P00748 615 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-206ENST00000466532 PAX7P23759 505 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 SNRPD2P62316 118 aaKnown RBP16.69■□□□□ 0.26
COL9A3-206ENST00000466532 TUBA1BP68363 451 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 TUBA4AP68366 448 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 EGR4Q05215 589 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 FADDQ13158 208 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 TUBA1AQ71U36 451 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 SLC35B4Q969S0 331 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 TLCD1Q96CP7 247 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 KTI12Q96EK9 354 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-206ENST00000466532 KCNK17Q96T54 332 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 KATNB1Q9BVA0 655 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 LINC00470Q9BZP3 86 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 FKBP7Q9Y680 259 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 USH1CQ9Y6N9 552 aa16.69■□□□□ 0.26
COL9A3-206ENST00000466532 A0A096LPE4 126 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms