RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 GPR68Q15743 365 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 MLF2Q15773 248 aaPredicted RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 GPR162Q16538 588 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 NDUFAF6Q330K2 333 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 DCST2Q5T1A1 773 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 TSSK4Q6SA08 328 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 ATRAIDQ6UW56 229 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 KRT77Q7Z794 578 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 TMEM17Q86X19 198 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 SERPINA12Q8IW75 414 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 ARL14Q8N4G2 192 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 C7orf57Q8NEG2 295 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 OR52E2Q8NGJ4 325 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 OR52B4Q8NGK2 314 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 ATOH1Q92858 354 aaPredicted RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 RBM18Q96H35 190 aaKnown RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 MYADMQ96S97 322 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 INSM2Q96T92 566 aaPredicted RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 STACQ99469 402 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 SMAD5Q99717 465 aaKnown RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 MACROD1Q9BQ69 325 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 TTTY10Q9BZA0 68 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 MFFQ9GZY8 342 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 SLITRK2Q9H156 845 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 ZBP1Q9H171 429 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 POLE3Q9NRF9 147 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 TM7SF3Q9NS93 570 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 HPF1Q9NWY4 346 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 RASL12Q9NYN1 266 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 MTFP1Q9UDX5 166 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 PURGQ9UJV8 347 aaKnown RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 C19orf53Q9UNZ5 99 aaPredicted RBP6.7□□□□□ -1.34
USP48-206ENST00000464577 WNT6Q9Y6F9 365 aa6.7□□□□□ -1.34
USP48-206ENST00000464577 DENND4AQ7Z401 1863 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 ACOD1A6NK06 481 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 MAGEB4O15481 346 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 NUPL2O15504 423 aaKnown RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 SIGLEC6O43699 453 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 MOSPD3O75425 235 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 APOC3P02656 99 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 IFI6P09912 130 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 AGTR1P30556 359 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 NAA10P41227 235 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 HCCSP53701 268 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 ERVFC1P60507 584 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 FGL1Q08830 312 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 PON3Q15166 354 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 C2orf68Q2NKX9 166 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 HNRNPA1L2Q32P51 320 aaKnown RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 CLVS2Q5SYC1 327 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 PDSS1Q5T2R2 415 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 FHL5Q5TD97 284 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 SLC6A19Q695T7 634 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 ZNF425Q6IV72 752 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 FAAP20Q6NZ36 180 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 ZCCHC12Q6PEW1 402 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 MTSS1LQ765P7 747 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 DND1Q8IYX4 353 aaKnown RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 ZNF433Q8N7K0 673 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 KREMEN2Q8NCW0 462 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 OR2L3Q8NG85 312 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 HMGB4Q8WW32 186 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 RGP1Q92546 391 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 TCEAL4Q96EI5 215 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 LRRC46Q96FV0 321 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 TNFRSF13CQ96RJ3 184 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 ALX4Q9H161 411 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 SLC6A17Q9H1V8 727 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 C1orf198Q9H425 327 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 XKR8Q9H6D3 395 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 BARX1Q9HBU1 254 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 DUSP22Q9NRW4 184 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 NDRG3Q9UGV2 375 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 KCNE5Q9UJ90 142 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 ABT1Q9ULW3 272 aaKnown RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 PLCL2Q9UPR0 1127 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 SLC27A6Q9Y2P4 619 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 SLC6A5Q9Y345 797 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 MUC22E2RYF6 1773 aaPredicted RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 A0A0D9SG52 128 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 TRBV5-5A0A0J9YX44 114 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 CHURC1-FNTBB4DL54 471 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 CCL16O15467 120 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 XRCC3O43542 346 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 EIF4E2O60573 245 aaKnown RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 RBBP9O75884 186 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 NDUFB2O95178 105 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 SIX6O95475 246 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 RLN2P04090 185 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 PCCBP05166 539 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 FCER2P06734 321 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 MELTFP08582 738 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 HIST1H1CP16403 213 aaKnown RBP6.69□□□□□ -1.34
USP48-206ENST00000464577 EPCAMP16422 314 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 MAOBP27338 520 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 CFPP27918 469 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 CMPK1P30085 196 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 PPM1AP35813 382 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 PSMB10P40306 273 aa6.69□□□□□ -1.34
USP48-206ENST00000464577 HOXA1P49639 335 aaPredicted RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms