RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 VNN3Q9NY84 501 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 LAMA5O15230 3695 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 MED12Q93074 2177 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 IGKV1D-42A0A075B6H8 117 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 SLC22A20A6NK97 555 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 MCIDASD6RGH6 385 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 M0R3G1 203 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 GPR171O14626 319 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 EI24O14681 340 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 EFNA2O43921 213 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 NPIPB7O75200 414 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 BGLAPP02818 100 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 OSMP13725 252 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ZNF43P17038 809 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 IL11P20809 199 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 RPS6KA3P51812 740 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PER3P56645 1201 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 CLDN18P56856 261 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PUDPQ08623 228 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 GXYLT1Q4G148 440 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ALG10Q5BKT4 473 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 FBXW10Q5XX13 1052 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 LPCAT4Q643R3 524 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 CD300LDQ6UXZ3 194 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 RASSF6Q6ZTQ3 369 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 FCRLAQ7L513 359 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 UEVLDQ8IX04 471 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ST6GALNAC3Q8NDV1 305 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ADPRHL1Q8NDY3 354 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ANKK1Q8NFD2 765 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 OR5M9Q8NGP3 310 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 OR51A7Q8NH64 312 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 LIPHQ8WWY8 451 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 DNAJA3Q96EY1 480 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 WDYHV1Q96HA8 205 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PLEKHA8Q96JA3 519 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 TRIB1Q96RU8 372 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 NPAS1Q99742 590 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 TM9SF2Q99805 663 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 SLX1AQ9BQ83 275 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 FUZQ9BT04 418 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 PRDM14Q9GZV8 571 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 Q9H521 79 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 COQ10BQ9H8M1 238 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 GLRX2Q9NS18 164 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 C20orf141Q9NUB4 165 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 SMPD3Q9NY59 655 aaPredicted RBP9.07□□□□□ -0.96
CD44-207ENST00000425428 USE1Q9NZ43 259 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 KLHL9Q9P2J3 617 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 SPRR3Q9UBC9 169 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 BAIAP2Q9UQB8 552 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 ZNF175Q9Y473 711 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 NOX1Q9Y5S8 564 aa9.07□□□□□ -0.96
CD44-207ENST00000425428 M0R082 166 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 XKRYO14609 159 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 AKR7A3O95154 331 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 IMPDH2P12268 514 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 NR2C1P13056 603 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 PEX2P28328 305 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 GSSP48637 474 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 PTDSS1P48651 473 aaKnown RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 DAP3P51398 398 aaKnown RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 SMSP52788 366 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 MLLT10P55197 1068 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 PON3Q15166 354 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 EIF2S3LQ2VIR3 472 aaKnown RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 TMEM201Q5SNT2 666 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 OGFRL1Q5TC84 451 aaPredicted RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 ZNF324BQ6AW86 544 aaPredicted RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 TMEM211Q6ICI0 200 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 FAHD1Q6P587 224 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 GALNT5Q7Z7M9 940 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 TMEM179BQ7Z7N9 219 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 GGNQ86UU5 652 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 PARP8Q8N3A8 854 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 CLDN22Q8N7P3 220 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 ZNF417Q8TAU3 575 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 FAM57AQ8TBR7 257 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 OXGR1Q96P68 337 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 SLC38A2Q96QD8 506 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 ZNF587Q96SQ5 575 aaPredicted RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 IFT27Q9BW83 186 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 SF3B5Q9BWJ5 86 aaKnown RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 RIBC2Q9H4K1 309 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 CALHM2Q9HA72 323 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 SMURF2Q9HAU4 748 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 INIPQ9NRY2 104 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 GRHPRQ9UBQ7 328 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 NKX1-2Q9UD57 310 aaPredicted RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 CDH10Q9Y6N8 788 aa9.06□□□□□ -0.96
CD44-207ENST00000425428 TLN1Q9Y490 2541 aaKnown RBP9.06□□□□□ -0.96
CD44-207ENST00000425428 TRAV27A0A087WT01 109 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 AQP7P3A6NL99 342 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 ZNF726A6NNF4 738 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 CLCA1A8K7I4 914 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 C11orf98E9PRG8 122 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 H0YJX3 145 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 SLC19A2O60779 497 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 IFNGP01579 166 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 IL2RAP01589 272 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms