RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 CHRNB3Q05901 458 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 BNIP2Q12982 314 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 ZNF311Q5JNZ3 666 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 TMEM225Q6GV28 225 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 SERPINA11Q86U17 422 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 CLIP4Q8N3C7 705 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 OR10H5Q8NGA6 315 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 GTF2H4Q92759 462 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 C1QTNF6Q9BXI9 259 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 MOV10Q9HCE1 1003 aaKnown RBP10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 BCL2L10Q9HD36 194 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 TMEM45AQ9NWC5 275 aa10.11□□□□□ -0.79
SQSTM1-203ENST00000422245 A0A096LNT2 108 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 ELOA3DA6NLF2 546 aaPredicted RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 C5orf58C9J3I9 102 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 CDH2P19022 906 aaPredicted RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 APOBEC3AP31941 199 aaPredicted RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 EFNA4P52798 201 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 SH3BGRP55822 239 aaPredicted RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 RGNQ15493 299 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 ELOA3BQ3SY89 546 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 TBRG1Q3YBR2 411 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 HIKESHIQ53FT3 197 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 C5orf46Q6UWT4 87 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 C6orf89Q6UWU4 347 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 CXXC5Q7LFL8 322 aaKnown RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 LSRQ86X29 649 aaPredicted RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 GOLGA6L1Q8N7Z2 621 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 ELOA3Q8NG57 546 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 OR1K1Q8NGR3 316 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 MFSD8Q8NHS3 518 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 C7orf26Q96N11 449 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 ALKBH3Q96Q83 286 aaPredicted RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 MDFIQ99750 246 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 KCNS3Q9BQ31 491 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 PAIP1Q9H074 479 aaKnown RBP10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 C12orf10Q9HB07 376 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 TMBIM4Q9HC24 238 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 YAE1D1Q9NRH1 226 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 RCE1Q9Y256 329 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 CHST2Q9Y4C5 530 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 PCDHB14Q9Y5E9 798 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 USH1CQ9Y6N9 552 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 PMF1-BGLAPU3KQ54 211 aa10.1□□□□□ -0.79
SQSTM1-203ENST00000422245 ALPK2Q86TB3 2170 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 ARPC4-TTLL3A0A0A6YYG9 625 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 A8MV72 311 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 FTCDNL1E5RQL4 147 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 CLIC1O00299 241 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 POLR3GO15318 223 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 FZD7O75084 574 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 TGDSO95455 350 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 LGI1O95970 557 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 NUDT7P0C024 238 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 PNMTP11086 282 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 ETS2P15036 469 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 HOXB9P17482 250 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 PPIBP23284 216 aaKnown RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 PRKAR1BP31321 381 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 SELENOPP49908 381 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 UBE2NP61088 152 aaKnown RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 LOXL1Q08397 574 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 GCNT6Q5T4J0 391 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 NIPAL3Q6P499 406 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 SLC2A7Q6PXP3 512 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 EPGNQ6UW88 154 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 CREB3L2Q70SY1 520 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 ZNF525Q8N782 197 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 ANKK1Q8NFD2 765 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 MAGEE2Q8TD90 523 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 FAM168AQ92567 244 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 MAL2Q969L2 176 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 SLC38A2Q96QD8 506 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 KATNB1Q9BVA0 655 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 PTDSS2Q9BVG9 487 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 LINC00470Q9BZP3 86 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 TCF7L2Q9NQB0 619 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 RPS6KB2Q9UBS0 482 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 FKBP7Q9Y680 259 aa10.09□□□□□ -0.79
SQSTM1-203ENST00000422245 MXRA5Q9NR99 2828 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 IGHV1-18A0A0C4DH31 117 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 AKAP8O43823 692 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 OR2T1O43869 369 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 PDE5AO76074 875 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 IFNA2P01563 188 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 CRYAAP02489 173 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF43P17038 809 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 SNRPD2P62316 118 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 VLDLRP98155 873 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 HOXC5Q00444 222 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 TMEM249Q2WGJ8 235 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 C3orf36Q3SXR2 165 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 CHRFAM7AQ494W8 412 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 LRIF1Q5T3J3 769 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 C6orf52Q5T4I8 152 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 FAM69AQ5T7M9 428 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 HMBOX1Q6NT76 420 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 ANKRD16Q6P6B7 361 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 DHRS4L2Q6PKH6 230 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 KRT73Q86Y46 540 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms