RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 C1orf52Q8N6N3 182 aaKnown RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 Q8NFD4 153 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 OR7G1Q8NGA0 311 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 LILRB1Q8NHL6 650 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 CDC26Q8NHZ8 85 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 NUBPLQ8TB37 319 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 RAB3IL1Q8TBN0 382 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 AGAP11Q8TF27 550 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PTPMT1Q8WUK0 201 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 C19orf60Q96EN9 201 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 SENP5Q96HI0 755 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 GAL3ST4Q96RP7 486 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 CCT7Q99832 543 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 MRPL15Q9P015 296 aaKnown RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 ASB4Q9Y574 426 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 CSAG2Q9Y5P2 127 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PCSK5Q92824 1860 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 C2orf92A0A1B0GVN3 265 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 GLOD5A6NK44 160 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 G3V2L1 256 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 H3BNX3 289 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 WWP2O00308 870 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 UBE2CO00762 179 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 AZIN1O14977 448 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SPRY3O43610 288 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 NME2P1O60361 137 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 OR2J2O76002 312 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 RSL1D1O76021 490 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 ANXA4P09525 319 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 ABOP16442 354 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 NTSP30990 170 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 MPIP34949 423 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 APOBEC1P41238 236 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 ZNF81P51508 661 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ERVK-8P63133 956 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 MRPS34P82930 218 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 ZNF763Q0D2J5 394 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ESPL1Q14674 2120 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ADIPOQQ15848 244 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 PRR30Q53SZ7 412 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 IGSF11Q5DX21 431 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TYW3Q6IPR3 259 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 CGB2Q6NT52 195 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SLC48A1Q6P1K1 146 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 RPS27LQ71UM5 84 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 LRRC25Q8N386 305 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 MDS2Q8NDY4 140 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 DUSP19Q8WTR2 217 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SSC4DQ8WTU2 575 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ANKRD9Q96BM1 317 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 SCMH1Q96GD3 660 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TXNDC15Q96J42 360 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 FAM111AQ96PZ2 611 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 RBM38Q9H0Z9 239 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 PPIL3Q9H2H8 161 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 TRIM45Q9H8W5 580 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 SLC17A7Q9P2U7 560 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 B4GALT7Q9UBV7 327 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 PRODH2Q9UF12 536 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 BCAP29Q9UHQ4 241 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ERVK-19Q9WJR5 959 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TMED5Q9Y3A6 229 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 CPAMD8Q8IZJ3 1885 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TENM4Q6N022 2769 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TMEM114B3SHH9 223 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 WNT9BO14905 357 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 BIRC5O15392 142 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SEC22BO75396 215 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ETHE1O95571 254 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 CPMP14384 443 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TIA1P31483 386 aaKnown RBP eCLIP5.7□□□□□ -1.5
USP40-202ENST00000409945 GCKP35557 465 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 RPL3P39023 403 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 NUDT6P53370 316 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 MRPS22P82650 360 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 GGNBP1Q5YKI7 109 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SLC22A10Q63ZE4 541 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SIGIRRQ6IA17 410 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SLC22A16Q86VW1 577 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 NUDCD3Q8IVD9 361 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 C10orf107Q8IVU9 208 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 CLYBLQ8N0X4 340 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ZFAND2BQ8WV99 257 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 C10orf82Q8WW14 230 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SGCDQ92629 289 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 PPWD1Q96BP3 646 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 ORAI1Q96D31 301 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 SIGLEC12Q96PQ1 595 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 RASL10BQ96S79 203 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 HBEGFQ99075 208 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 FAM173AQ9BQD7 235 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 ZNF717Q9BY31 904 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 SLCO1B3Q9NPD5 702 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 FARSBQ9NSD9 589 aaKnown RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 TEX10Q9NXF1 929 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 CNIH4Q9P003 139 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 OR14J1Q9UGF5 321 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 BOKQ9UMX3 212 aaPredicted RBP5.7□□□□□ -1.5
USP40-202ENST00000409945 DLGAP4Q9Y2H0 992 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 FIS1Q9Y3D6 152 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms