RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZNF417Q8TAU3 575 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 WDYHV1Q96HA8 205 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 ZNF587Q96SQ5 575 aaPredicted RBP16.21■□□□□ 0.19
SDC1-203ENST00000403076 TACO1Q9BSH4 297 aaKnown RBP16.21■□□□□ 0.19
SDC1-203ENST00000403076 NAA11Q9BSU3 229 aaPredicted RBP16.21■□□□□ 0.19
SDC1-203ENST00000403076 SMPD3Q9NY59 655 aaPredicted RBP16.21■□□□□ 0.19
SDC1-203ENST00000403076 ZZEF1O43149 2961 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 ZNHIT1O43257 154 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 EIF1BO60739 113 aaKnown RBP16.2■□□□□ 0.18
SDC1-203ENST00000403076 RCBTB2O95199 551 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 ADORA3P0DMS8 318 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 OSMP13725 252 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 CPN1P15169 458 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 RAC3P60763 192 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 SLC36A3Q495N2 470 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 GXYLT1Q4G148 440 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 H1FNTQ75WM6 255 aaPredicted RBP16.2■□□□□ 0.18
SDC1-203ENST00000403076 TMEM99Q8N816 258 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 FANK1Q8TC84 345 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 ADGRG7Q96K78 797 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 NDEL1Q9GZM8 345 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 CHST11Q9NPF2 352 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 MRPL39Q9NYK5 338 aaKnown RBP16.2■□□□□ 0.18
SDC1-203ENST00000403076 SEC14L4Q9UDX3 406 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 SIGLEC7Q9Y286 467 aa16.2■□□□□ 0.18
SDC1-203ENST00000403076 OR14I1A6ND48 311 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PTP4A3O75365 173 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 SYNGR4O95473 234 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 SNAP29O95721 258 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 ENPP1P22413 925 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 AHCYP23526 432 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PTGS2P35354 604 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 RPL4P36578 427 aaKnown RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 ANKDD1AQ495B1 522 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 SMARCD3Q6STE5 483 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 GFRALQ6UXV0 394 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 IZUMO2Q6UXV1 221 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PM20D2Q8IYS1 436 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PARP8Q8N3A8 854 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 SCAIQ8N9R8 606 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 OR52L1Q8NGH7 329 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 OR5M9Q8NGP3 310 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 TEX47Q8TBZ9 253 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 ZNF845Q96IR2 970 aaPredicted RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 SRXN1Q9BYN0 137 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 OR52D1Q9H346 318 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 EGLN3Q9H6Z9 239 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PAQR5Q9NXK6 330 aaPredicted RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 REV1Q9UBZ9 1251 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 B3GALT5Q9Y2C3 310 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 CDH10Q9Y6N8 788 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 SVILO95425 2214 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 ATRXP46100 2492 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 IGHV3-15A0A0B4J1V0 119 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 C11orf98E9PRG8 122 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 BCKDKO14874 412 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 ATXN7O15265 892 aaPredicted RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 RNF13O43567 381 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 DNPH1O43598 174 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 NDUFB2O95178 105 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 IGFBP1P08833 259 aaPredicted RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 ABOP16442 354 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 AQP2P41181 271 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 TDGF1P3P51864 188 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 CRISP1P54107 249 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 AQP4P55087 323 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 MLLT10P55197 1068 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PRPS1P60891 318 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 ESRRGP62508 458 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 TMEM225Q6GV28 225 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 RPL13AP3Q6NVV1 102 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PAQR6Q6TCH4 344 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 ZNF620Q6ZNG0 422 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 KIF18BQ86Y91 864 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 MOSPD2Q8NHP6 518 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 CPNE4Q96A23 557 aaPredicted RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 SAMD8Q96LT4 415 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 RDH12Q96NR8 316 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 SLX1AQ9BQ83 275 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PRRG4Q9BZD6 226 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 PRDM14Q9GZV8 571 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 TOR3AQ9H497 397 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 MCCC2Q9HCC0 563 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 TBC1D23Q9NUY8 699 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 IL20RAQ9UHF4 553 aa16.19■□□□□ 0.18
SDC1-203ENST00000403076 MCTS1Q9ULC4 181 aaKnown RBP16.19■□□□□ 0.18
SDC1-203ENST00000403076 PLPP3O14495 311 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 SERPINI2O75830 405 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 TPOP07202 933 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 RPL18Q07020 188 aaKnown RBP16.18■□□□□ 0.18
SDC1-203ENST00000403076 NPRL3Q12980 569 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 ALG10Q5BKT4 473 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 CLDN22Q8N7P3 220 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 CPT1CQ8TCG5 803 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 ROBO4Q8WZ75 1007 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 UCN2Q96RP3 112 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 TSSK6Q9BXA6 273 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 IL20Q9NYY1 176 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 HIF3AQ9Y2N7 669 aa16.18■□□□□ 0.18
SDC1-203ENST00000403076 AQP7P3A6NL99 342 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms