RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TSSK6Q9BXA6 273 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 GABARAPL3Q9BY60 117 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 OR52D1Q9H346 318 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 FAM118AQ9NWS6 357 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 ALKBH4Q9NXW9 302 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 BAIAP2Q9UQB8 552 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SLC6A5Q9Y345 797 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 CNTRLQ7Z7A1 2325 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 TRAV27A0A087WT01 109 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 ZC3H12DA2A288 527 aaKnown RBP12.79□□□□□ -0.36
SKA1-202ENST00000398452 EIF1AYO14602 144 aaKnown RBP12.79□□□□□ -0.36
SKA1-202ENST00000398452 KLF4O43474 513 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 EIF1BO60739 113 aaKnown RBP12.79□□□□□ -0.36
SKA1-202ENST00000398452 NPIPB7O75200 414 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 BGLAPP02818 100 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 OPN1LWP04000 364 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 PDGFAP04085 211 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 NOS3P29474 1203 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 GRPRP30550 384 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 PMP22Q01453 160 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 MYBPHQ13203 477 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 KEAP1Q14145 624 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 SGCBQ16585 318 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 NHSL2Q5HYW2 709 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 C6orf52Q5T4I8 152 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 SLC27A4Q6P1M0 643 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 ZNF620Q6ZNG0 422 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 TMPPEQ6ZT21 453 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 ESPNLQ6ZVH7 1005 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 C8orf59Q8N0T1 100 aaPredicted RBP12.79□□□□□ -0.36
SKA1-202ENST00000398452 OR2T33Q8NG76 320 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 LIPHQ8WWY8 451 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 DNAJA3Q96EY1 480 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 SLC6A15Q9H2J7 730 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 PAQR5Q9NXK6 330 aaPredicted RBP12.79□□□□□ -0.36
SKA1-202ENST00000398452 TRAPPC4Q9Y296 219 aa12.79□□□□□ -0.36
SKA1-202ENST00000398452 A0A1W2PNR3 127 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 CDC42EP2O14613 210 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 SLC16A6O15403 523 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 RNF13O43567 381 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 PMS2P2O95744 297 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 HMGN1P05114 100 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 ADORA3P0DMS8 318 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 IL11P20809 199 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 AHCYP23526 432 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 DIO1P49895 249 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 CARD18P57730 90 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 IL5RAQ01344 420 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 GINS1Q14691 196 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 PTGES3Q15185 160 aaKnown RBP12.78□□□□□ -0.36
SKA1-202ENST00000398452 ALG10Q5BKT4 473 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 CLEC12AQ5QGZ9 265 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 HBMQ6B0K9 141 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 SLC46A3Q7Z3Q1 461 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 SCAIQ8N9R8 606 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 OR2V1Q8NHB1 315 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 NEIL3Q8TAT5 605 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 TFAP2CQ92754 450 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 ARL5BQ96KC2 179 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 SAMD8Q96LT4 415 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 CNBD2Q96M20 576 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 MOGAT1Q96PD6 335 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 TNFRSF13CQ96RJ3 184 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 MBOAT4Q96T53 435 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 NPAS1Q99742 590 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 GPA33Q99795 319 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 GRIP2Q9C0E4 1043 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 EGLN3Q9H6Z9 239 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 ZDHHC11Q9H8X9 412 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 MRPL39Q9NYK5 338 aaKnown RBP12.78□□□□□ -0.36
SKA1-202ENST00000398452 IL20Q9NYY1 176 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 REV1Q9UBZ9 1251 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 SIGLEC7Q9Y286 467 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 LRRC42Q9Y546 428 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 EML6Q6ZMW3 1958 aa12.78□□□□□ -0.36
SKA1-202ENST00000398452 LIPT2A6NK58 231 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 LRRN3E7EW58 273 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 NPIPA5E9PKD4 350 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 M0R082 166 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 M0R3G1 203 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 DNPH1O43598 174 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 EFNA2O43921 213 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 MPZL2O60487 215 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 SYNGR4O95473 234 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 IFNGP01579 166 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 CELA3AP09093 270 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 ASAH2BP0C7U1 165 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 EIF1AXP47813 144 aaKnown RBP12.77□□□□□ -0.37
SKA1-202ENST00000398452 GFRA1P56159 465 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 B3GALT5-AS1P59052 145 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 SRYQ05066 204 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 C1DQ13901 141 aaKnown RBP12.77□□□□□ -0.37
SKA1-202ENST00000398452 BCL2A1Q16548 175 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 PLEKHN1Q494U1 663 aaPredicted RBP12.77□□□□□ -0.37
SKA1-202ENST00000398452 C1QL3Q5VWW1 255 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 TMEM225Q6GV28 225 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 H1FNTQ75WM6 255 aaPredicted RBP12.77□□□□□ -0.37
SKA1-202ENST00000398452 LRRC17Q8N6Y2 441 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 ZNF417Q8TAU3 575 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 FAM81AQ8TBF8 368 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms