RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ACP1P24666 158 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SOX8P57073 446 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 FAM209AQ5JX71 171 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 NOXA1Q86UR1 476 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SLITRK4Q8IW52 837 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ELMOD2Q8IZ81 293 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 OR2AJ1Q8NGZ0 328 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 OR8K3Q8NH51 312 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ANKRD9Q96BM1 317 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SPACA9Q96E40 222 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SEMA4CQ9C0C4 833 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 MCTS1Q9ULC4 181 aaKnown RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 IER3IP1Q9Y5U9 82 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 C9orf172C9J069 976 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 PRR23D1E9PI22 279 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 CTDSP2O14595 271 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 CXCL13O43927 109 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SUSD5O60279 629 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 DOK2O60496 412 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 CDK1P06493 297 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 PRR23D2P0DMB1 279 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 IL7P13232 177 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 PCGF2P35227 344 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 AIMP2Q13155 320 aaKnown RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF766Q5HY98 468 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 OR13C2Q8NGS9 318 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 MOSPD2Q8NHP6 518 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 TMEM255BQ8WV15 326 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF717Q9BY31 904 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SYNPO2LQ9H987 977 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 PSORS1C1Q9UIG5 152 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 MRPS7Q9Y2R9 242 aaKnown RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 HS3ST3B1Q9Y662 390 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 DOPEY2Q9Y3R5 2298 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 GBF1Q92538 1859 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 M0R082 166 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 TMCC2O75069 709 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 EPHA2P29317 976 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 AQP2P41181 271 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 RGS6P49758 472 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 EMDP50402 254 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 TSTQ16762 297 aaKnown RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 PODNL1Q6PEZ8 512 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 GFRALQ6UXV0 394 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ASB18Q6ZVZ8 466 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 NKAIN4Q8IVV8 208 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ENTHD1Q8IYW4 607 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 GPR137CQ8N3F9 429 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SDR9C7Q8NEX9 313 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 C9orf43Q8TAL5 461 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-205ENST00000392004 ENKURQ8TC29 256 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 BPIFA2Q96DR5 249 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 RASL10BQ96S79 203 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 CENPOQ9BU64 300 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SLC22A4Q9H015 551 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 RNF167Q9H6Y7 350 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 SMURF1Q9HCE7 757 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 PILRAQ9UKJ1 303 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 TRBV4-1A0A0J9YWV2 114 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 MEIOCA2RUB1 952 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 ZSCAN5BA6NJL1 495 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 LIPCP11150 499 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 EVI2BP34910 448 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 CD83Q01151 205 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 HSF2Q03933 536 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 ST3GAL4Q11206 333 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 ILKQ13418 452 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 LY6DQ14210 128 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 SOWAHCQ53LP3 525 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 MSRB3Q8IXL7 192 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 ROBO4Q8WZ75 1007 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 C1GALT1C1Q96EU7 318 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 TSC2P49815 1807 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 CCDC88CQ9P219 2028 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 PYCARD-AS1I3L0S3 204 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 WBP4O75554 376 aaKnown RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 NTN1O95631 604 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 CBX7O95931 251 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 RHCEP18577 417 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 TMEM201Q5SNT2 666 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 MORN4Q8NDC4 146 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 GGHQ92820 318 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 ADAD1Q96M93 576 aaKnown RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 TRIB1Q96RU8 372 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 PCDHGB2Q9Y5G2 931 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 PCDHGA1Q9Y5H4 931 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 KIF26AQ9ULI4 1882 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 SONP18583 2426 aaKnown RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 TMED7-TICAM2A0A0A6YYA0 188 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 IGHV3-64DA0A0J9YX35 117 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 A0A1W2PPK0 400 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 A0A1W2PQ72 361 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 OR6C70A6NIJ9 312 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 SSX4O60224 188 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 OR5F1O95221 314 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 PLATP00750 562 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 F8A1P23610 371 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 TNFSF8P32971 234 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 HTR2BP41595 481 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms