RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RXFP4Q8TDU9 374 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 TMEM239Q8WW34 195 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 RNF166Q96A37 237 aaPredicted RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 MIB2Q96AX9 1013 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 TLNRD1Q9H1K6 362 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 OR52A5Q9H2C5 316 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SYNPO2LQ9H987 977 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 MYEF2Q9P2K5 600 aaKnown RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 MTFP1Q9UDX5 166 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 GNG8Q9UK08 70 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ADAM29Q9UKF5 820 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ICAM5Q9UMF0 924 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 V9GY05 133 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 A0A0C4DFX4 3053 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 HEATR5BQ9P2D3 2071 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 A0A1W2PPV9 198 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 RNF222A6NCQ9 220 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SYNDIG1LA6NDD5 238 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 PRR32B1ATL7 298 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 H0YC42 278 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SMAD9O15198 467 aaKnown RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 EMC8O43402 210 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SGCEO43556 437 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 AIFM1O95831 613 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ACTL6AO96019 429 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 RAB40ALP0C0E4 278 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 RORAP35398 523 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 PTGFRP43088 359 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 DEFB115Q30KQ5 88 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 CCDC157Q569K6 752 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 C10orf91Q5T1B1 145 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 FAM46CQ5VWP2 391 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 FAM111BQ6SJ93 734 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 UQCC3Q6UW78 93 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 DPPA4Q7L190 304 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 BIVMQ86UB2 503 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 CCDC36Q8IYA8 594 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ZNF461Q8TAF7 563 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SLC2A12Q8TD20 617 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 RAB40AQ8WXH6 277 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 BCL2L14Q9BZR8 327 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 TSPAN10Q9H1Z9 355 aaPredicted RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 EPHX3Q9H6B9 360 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 APMAPQ9HDC9 416 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 MEPEQ9NQ76 525 aaPredicted RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 ASF1BQ9NVP2 202 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SAGE1Q9NXZ1 904 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SLC25A13Q9UJS0 675 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 CES1P1Q9UKY3 287 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 TNFSF18Q9UNG2 199 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 IGKV1-8A0A0C4DH67 115 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 A0A0D9SG52 128 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 RAB19A4D1S5 217 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TRAPPC13A5PLN9 417 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 LRIT2A6NDA9 550 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 MEIS3P1A6NDR6 274 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 PSMD9O00233 223 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 IMPA2O14732 288 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 BCL2L11O43521 198 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR2T1O43869 369 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 NDUFS6O75380 124 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 POP7O75817 140 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZFPL1O95159 310 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 RCBTB2O95199 551 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 EFEMP2O95967 443 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 PAK4O96013 591 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 CD8AP01732 235 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ELFN1P0C7U0 828 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ERGP11308 486 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF3P17036 446 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CSRP1P21291 193 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 CTGFP29279 349 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CAPZA2P47755 286 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TRA2BP62995 288 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 EEF1A1P68104 462 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 FHL1Q13642 323 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SNTB1Q13884 538 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 C4orf46Q504U0 113 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 AVPI1Q5T686 147 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TPGS2Q68CL5 300 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 TMPRSS11FQ6ZWK6 438 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 SLC35F2Q8IXU6 374 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 DND1Q8IYX4 353 aaKnown RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR2L13Q8N349 312 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OR6S1Q8NH40 331 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 THAP6Q8TBB0 222 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CDS1Q92903 461 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 RAD51AP1Q96B01 352 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 OTUB2Q96DC9 234 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 BPIFA2Q96DR5 249 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 MNTQ99583 582 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 VRK1Q99986 396 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 MENTQ9BUN1 341 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 ZNF471Q9BX82 626 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 TINAGL1Q9GZM7 467 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 KRCC1Q9NPI7 259 aaPredicted RBP6.22□□□□□ -1.41
VPS39-202ENST00000348544 SPHK1Q9NYA1 384 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 CALML5Q9NZT1 146 aa6.22□□□□□ -1.41
VPS39-202ENST00000348544 NCDNQ9UBB6 729 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms